Strain Fitness in Variovorax sp. OAS795 around ABID97_RS25360

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS25350 and ABID97_RS25355 are separated by 109 nucleotidesABID97_RS25355 and ABID97_RS25360 are separated by 157 nucleotidesABID97_RS25360 and ABID97_RS25365 are separated by 29 nucleotidesABID97_RS25365 and ABID97_RS25370 are separated by 17 nucleotides ABID97_RS25350: ABID97_RS25350 - GNAT family N-acetyltransferase, at 5,253,030 to 5,253,764 _RS25350 ABID97_RS25355: ABID97_RS25355 - Lrp/AsnC family transcriptional regulator, at 5,253,874 to 5,254,347 _RS25355 ABID97_RS25360: ABID97_RS25360 - 4-hydroxyphenylpyruvate dioxygenase, at 5,254,505 to 5,255,632 _RS25360 ABID97_RS25365: ABID97_RS25365 - transporter substrate-binding domain-containing protein, at 5,255,662 to 5,256,459 _RS25365 ABID97_RS25370: ABID97_RS25370 - phenylalanine 4-monooxygenase, at 5,256,477 to 5,257,361 _RS25370 Position (kb) 5254 5255 5256Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 5253.523 kb on + strand, within ABID97_RS25350at 5253.524 kb on - strand, within ABID97_RS25350at 5253.524 kb on - strand, within ABID97_RS25350at 5253.524 kb on - strand, within ABID97_RS25350at 5253.554 kb on - strand, within ABID97_RS25350at 5253.568 kb on + strand, within ABID97_RS25350at 5253.773 kb on + strandat 5253.773 kb on + strandat 5253.773 kb on + strandat 5253.774 kb on - strandat 5253.775 kb on + strandat 5253.776 kb on - strandat 5253.825 kb on + strandat 5253.825 kb on + strandat 5253.826 kb on - strandat 5253.875 kb on + strandat 5253.876 kb on - strandat 5253.980 kb on + strand, within ABID97_RS25355at 5253.980 kb on + strand, within ABID97_RS25355at 5253.980 kb on + strand, within ABID97_RS25355at 5253.980 kb on + strand, within ABID97_RS25355at 5253.980 kb on + strand, within ABID97_RS25355at 5253.981 kb on - strand, within ABID97_RS25355at 5253.981 kb on - strand, within ABID97_RS25355at 5253.981 kb on - strand, within ABID97_RS25355at 5254.016 kb on + strand, within ABID97_RS25355at 5254.016 kb on + strand, within ABID97_RS25355at 5254.016 kb on + strand, within ABID97_RS25355at 5254.017 kb on - strand, within ABID97_RS25355at 5254.017 kb on - strand, within ABID97_RS25355at 5254.074 kb on + strand, within ABID97_RS25355at 5254.142 kb on + strand, within ABID97_RS25355at 5254.142 kb on + strand, within ABID97_RS25355at 5254.142 kb on + strand, within ABID97_RS25355at 5254.142 kb on + strand, within ABID97_RS25355at 5254.143 kb on - strand, within ABID97_RS25355at 5254.190 kb on + strand, within ABID97_RS25355at 5254.190 kb on + strand, within ABID97_RS25355at 5254.191 kb on - strand, within ABID97_RS25355at 5254.280 kb on + strand, within ABID97_RS25355at 5254.280 kb on + strand, within ABID97_RS25355at 5254.280 kb on + strand, within ABID97_RS25355at 5254.280 kb on + strand, within ABID97_RS25355at 5254.280 kb on + strand, within ABID97_RS25355at 5254.281 kb on - strand, within ABID97_RS25355at 5254.427 kb on + strandat 5254.428 kb on - strandat 5254.580 kb on + strandat 5254.580 kb on + strandat 5254.580 kb on + strandat 5254.581 kb on - strandat 5254.673 kb on + strand, within ABID97_RS25360at 5254.673 kb on + strand, within ABID97_RS25360at 5254.674 kb on - strand, within ABID97_RS25360at 5254.674 kb on - strand, within ABID97_RS25360at 5254.800 kb on - strand, within ABID97_RS25360at 5254.901 kb on + strand, within ABID97_RS25360at 5254.901 kb on + strand, within ABID97_RS25360at 5254.901 kb on + strand, within ABID97_RS25360at 5254.902 kb on - strand, within ABID97_RS25360at 5254.902 kb on - strand, within ABID97_RS25360at 5254.902 kb on - strand, within ABID97_RS25360at 5254.902 kb on - strand, within ABID97_RS25360at 5254.902 kb on - strand, within ABID97_RS25360at 5254.902 kb on - strand, within ABID97_RS25360at 5254.902 kb on - strand, within ABID97_RS25360at 5254.967 kb on + strand, within ABID97_RS25360at 5254.967 kb on + strand, within ABID97_RS25360at 5254.967 kb on + strand, within ABID97_RS25360at 5254.967 kb on + strand, within ABID97_RS25360at 5254.967 kb on + strand, within ABID97_RS25360at 5254.968 kb on - strand, within ABID97_RS25360at 5255.042 kb on + strand, within ABID97_RS25360at 5255.042 kb on + strand, within ABID97_RS25360at 5255.042 kb on + strand, within ABID97_RS25360at 5255.043 kb on - strand, within ABID97_RS25360at 5255.043 kb on - strand, within ABID97_RS25360at 5255.043 kb on - strand, within ABID97_RS25360at 5255.043 kb on - strand, within ABID97_RS25360at 5255.069 kb on + strand, within ABID97_RS25360at 5255.069 kb on + strand, within ABID97_RS25360at 5255.070 kb on - strand, within ABID97_RS25360at 5255.135 kb on + strand, within ABID97_RS25360at 5255.135 kb on + strand, within ABID97_RS25360at 5255.135 kb on + strand, within ABID97_RS25360at 5255.135 kb on + strand, within ABID97_RS25360at 5255.135 kb on + strand, within ABID97_RS25360at 5255.135 kb on + strand, within ABID97_RS25360at 5255.135 kb on + strand, within ABID97_RS25360at 5255.136 kb on - strand, within ABID97_RS25360at 5255.136 kb on - strand, within ABID97_RS25360at 5255.136 kb on - strand, within ABID97_RS25360at 5255.136 kb on - strand, within ABID97_RS25360at 5255.136 kb on - strand, within ABID97_RS25360at 5255.136 kb on - strand, within ABID97_RS25360at 5255.136 kb on - strand, within ABID97_RS25360at 5255.255 kb on + strand, within ABID97_RS25360at 5255.255 kb on + strand, within ABID97_RS25360at 5255.255 kb on + strand, within ABID97_RS25360at 5255.256 kb on - strand, within ABID97_RS25360at 5255.256 kb on - strand, within ABID97_RS25360at 5255.256 kb on - strand, within ABID97_RS25360at 5255.256 kb on - strand, within ABID97_RS25360at 5255.267 kb on + strand, within ABID97_RS25360at 5255.267 kb on + strand, within ABID97_RS25360at 5255.267 kb on + strand, within ABID97_RS25360at 5255.267 kb on + strand, within ABID97_RS25360at 5255.268 kb on - strand, within ABID97_RS25360at 5255.268 kb on - strand, within ABID97_RS25360at 5255.268 kb on - strand, within ABID97_RS25360at 5255.268 kb on - strand, within ABID97_RS25360at 5255.315 kb on + strand, within ABID97_RS25360at 5255.315 kb on + strand, within ABID97_RS25360at 5255.316 kb on - strand, within ABID97_RS25360at 5255.375 kb on + strand, within ABID97_RS25360at 5255.375 kb on + strand, within ABID97_RS25360at 5255.375 kb on + strand, within ABID97_RS25360at 5255.375 kb on + strand, within ABID97_RS25360at 5255.375 kb on + strand, within ABID97_RS25360at 5255.375 kb on + strand, within ABID97_RS25360at 5255.375 kb on + strand, within ABID97_RS25360at 5255.375 kb on + strand, within ABID97_RS25360at 5255.376 kb on - strand, within ABID97_RS25360at 5255.376 kb on - strand, within ABID97_RS25360at 5255.376 kb on - strand, within ABID97_RS25360at 5255.376 kb on - strand, within ABID97_RS25360at 5255.376 kb on - strand, within ABID97_RS25360at 5255.378 kb on + strand, within ABID97_RS25360at 5255.378 kb on + strand, within ABID97_RS25360at 5255.378 kb on + strand, within ABID97_RS25360at 5255.378 kb on + strand, within ABID97_RS25360at 5255.378 kb on + strand, within ABID97_RS25360at 5255.378 kb on + strand, within ABID97_RS25360at 5255.378 kb on + strand, within ABID97_RS25360at 5255.378 kb on + strand, within ABID97_RS25360at 5255.378 kb on + strand, within ABID97_RS25360at 5255.379 kb on - strand, within ABID97_RS25360at 5255.379 kb on - strand, within ABID97_RS25360at 5255.379 kb on - strand, within ABID97_RS25360at 5255.379 kb on - strand, within ABID97_RS25360at 5255.631 kb on - strandat 5255.631 kb on - strandat 5255.631 kb on - strandat 5255.815 kb on + strand, within ABID97_RS25365at 5255.815 kb on + strand, within ABID97_RS25365at 5255.815 kb on + strand, within ABID97_RS25365at 5255.815 kb on + strand, within ABID97_RS25365at 5255.816 kb on - strand, within ABID97_RS25365at 5255.816 kb on - strand, within ABID97_RS25365at 5256.034 kb on + strand, within ABID97_RS25365at 5256.034 kb on + strand, within ABID97_RS25365at 5256.035 kb on - strand, within ABID97_RS25365at 5256.035 kb on - strand, within ABID97_RS25365at 5256.035 kb on - strand, within ABID97_RS25365at 5256.085 kb on + strand, within ABID97_RS25365at 5256.085 kb on + strand, within ABID97_RS25365at 5256.085 kb on + strand, within ABID97_RS25365at 5256.085 kb on + strand, within ABID97_RS25365at 5256.085 kb on + strand, within ABID97_RS25365at 5256.086 kb on - strand, within ABID97_RS25365at 5256.086 kb on - strand, within ABID97_RS25365at 5256.086 kb on - strand, within ABID97_RS25365at 5256.334 kb on + strand, within ABID97_RS25365at 5256.335 kb on - strand, within ABID97_RS25365at 5256.335 kb on - strand, within ABID97_RS25365at 5256.385 kb on + strandat 5256.385 kb on + strandat 5256.385 kb on + strandat 5256.385 kb on + strandat 5256.385 kb on + strandat 5256.457 kb on + strandat 5256.457 kb on + strandat 5256.457 kb on + strandat 5256.458 kb on - strandat 5256.458 kb on - strandat 5256.458 kb on - strandat 5256.525 kb on + strandat 5256.588 kb on + strand, within ABID97_RS25370at 5256.588 kb on + strand, within ABID97_RS25370at 5256.588 kb on + strand, within ABID97_RS25370at 5256.588 kb on + strand, within ABID97_RS25370at 5256.588 kb on + strand, within ABID97_RS25370at 5256.589 kb on - strand, within ABID97_RS25370at 5256.615 kb on + strand, within ABID97_RS25370at 5256.616 kb on - strand, within ABID97_RS25370at 5256.616 kb on - strand, within ABID97_RS25370

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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5,253,523 + ABID97_RS25350 0.67 -0.1
5,253,524 - ABID97_RS25350 0.67 -0.5
5,253,524 - ABID97_RS25350 0.67 -0.3
5,253,524 - ABID97_RS25350 0.67 -0.6
5,253,554 - ABID97_RS25350 0.71 +0.5
5,253,568 + ABID97_RS25350 0.73 -0.1
5,253,773 + -0.2
5,253,773 + -0.4
5,253,773 + +1.1
5,253,774 - +0.1
5,253,775 + +0.4
5,253,776 - -0.9
5,253,825 + +0.1
5,253,825 + +0.1
5,253,826 - -0.4
5,253,875 + -0.2
5,253,876 - -0.5
5,253,980 + ABID97_RS25355 0.22 -4.1
5,253,980 + ABID97_RS25355 0.22 -5.5
5,253,980 + ABID97_RS25355 0.22 -3.4
5,253,980 + ABID97_RS25355 0.22 -4.1
5,253,980 + ABID97_RS25355 0.22 -1.6
5,253,981 - ABID97_RS25355 0.23 -6.3
5,253,981 - ABID97_RS25355 0.23 -3.7
5,253,981 - ABID97_RS25355 0.23 -6.0
5,254,016 + ABID97_RS25355 0.30 -6.1
5,254,016 + ABID97_RS25355 0.30 -2.2
5,254,016 + ABID97_RS25355 0.30 -5.0
5,254,017 - ABID97_RS25355 0.30 -5.1
5,254,017 - ABID97_RS25355 0.30 -2.7
5,254,074 + ABID97_RS25355 0.42 -5.2
5,254,142 + ABID97_RS25355 0.57 -5.7
5,254,142 + ABID97_RS25355 0.57 -3.8
5,254,142 + ABID97_RS25355 0.57 -5.1
5,254,142 + ABID97_RS25355 0.57 -3.1
5,254,143 - ABID97_RS25355 0.57 -6.1
5,254,190 + ABID97_RS25355 0.67 -3.3
5,254,190 + ABID97_RS25355 0.67 -3.6
5,254,191 - ABID97_RS25355 0.67 -1.1
5,254,280 + ABID97_RS25355 0.86 -4.8
5,254,280 + ABID97_RS25355 0.86 -3.0
5,254,280 + ABID97_RS25355 0.86 -4.4
5,254,280 + ABID97_RS25355 0.86 -0.3
5,254,280 + ABID97_RS25355 0.86 -6.4
5,254,281 - ABID97_RS25355 0.86 -5.2
5,254,427 + -1.1
5,254,428 - -4.2
5,254,580 + -1.6
5,254,580 + -4.8
5,254,580 + -1.6
5,254,581 - -2.4
5,254,673 + ABID97_RS25360 0.15 -4.3
5,254,673 + ABID97_RS25360 0.15 -6.1
5,254,674 - ABID97_RS25360 0.15 -4.0
5,254,674 - ABID97_RS25360 0.15 -4.1
5,254,800 - ABID97_RS25360 0.26 -3.0
5,254,901 + ABID97_RS25360 0.35 -0.9
5,254,901 + ABID97_RS25360 0.35 -1.6
5,254,901 + ABID97_RS25360 0.35 -4.0
5,254,902 - ABID97_RS25360 0.35 -5.4
5,254,902 - ABID97_RS25360 0.35 -5.8
5,254,902 - ABID97_RS25360 0.35 -3.5
5,254,902 - ABID97_RS25360 0.35 -2.4
5,254,902 - ABID97_RS25360 0.35 -5.5
5,254,902 - ABID97_RS25360 0.35 -4.6
5,254,902 - ABID97_RS25360 0.35 +0.5
5,254,967 + ABID97_RS25360 0.41 -0.5
5,254,967 + ABID97_RS25360 0.41 -4.7
5,254,967 + ABID97_RS25360 0.41 -5.7
5,254,967 + ABID97_RS25360 0.41 -4.3
5,254,967 + ABID97_RS25360 0.41 -1.8
5,254,968 - ABID97_RS25360 0.41 -2.1
5,255,042 + ABID97_RS25360 0.48 -5.4
5,255,042 + ABID97_RS25360 0.48 -4.8
5,255,042 + ABID97_RS25360 0.48 -4.0
5,255,043 - ABID97_RS25360 0.48 -0.5
5,255,043 - ABID97_RS25360 0.48 -4.7
5,255,043 - ABID97_RS25360 0.48 -0.7
5,255,043 - ABID97_RS25360 0.48 -1.7
5,255,069 + ABID97_RS25360 0.50 -3.8
5,255,069 + ABID97_RS25360 0.50 -5.2
5,255,070 - ABID97_RS25360 0.50 -4.7
5,255,135 + ABID97_RS25360 0.56 -1.4
5,255,135 + ABID97_RS25360 0.56 -4.1
5,255,135 + ABID97_RS25360 0.56 -0.9
5,255,135 + ABID97_RS25360 0.56 -5.6
5,255,135 + ABID97_RS25360 0.56 -2.3
5,255,135 + ABID97_RS25360 0.56 -1.7
5,255,135 + ABID97_RS25360 0.56 -2.0
5,255,136 - ABID97_RS25360 0.56 -5.4
5,255,136 - ABID97_RS25360 0.56 -0.5
5,255,136 - ABID97_RS25360 0.56 -3.2
5,255,136 - ABID97_RS25360 0.56 -3.3
5,255,136 - ABID97_RS25360 0.56 -5.5
5,255,136 - ABID97_RS25360 0.56 -3.1
5,255,136 - ABID97_RS25360 0.56 -2.5
5,255,255 + ABID97_RS25360 0.66 -5.8
5,255,255 + ABID97_RS25360 0.66 -1.3
5,255,255 + ABID97_RS25360 0.66 -1.7
5,255,256 - ABID97_RS25360 0.67 -1.7
5,255,256 - ABID97_RS25360 0.67 -1.7
5,255,256 - ABID97_RS25360 0.67 -3.8
5,255,256 - ABID97_RS25360 0.67 -3.5
5,255,267 + ABID97_RS25360 0.68 -1.1
5,255,267 + ABID97_RS25360 0.68 -5.2
5,255,267 + ABID97_RS25360 0.68 -0.3
5,255,267 + ABID97_RS25360 0.68 -4.8
5,255,268 - ABID97_RS25360 0.68 -4.7
5,255,268 - ABID97_RS25360 0.68 -4.3
5,255,268 - ABID97_RS25360 0.68 -3.0
5,255,268 - ABID97_RS25360 0.68 -2.3
5,255,315 + ABID97_RS25360 0.72 -4.7
5,255,315 + ABID97_RS25360 0.72 -1.3
5,255,316 - ABID97_RS25360 0.72 -4.0
5,255,375 + ABID97_RS25360 0.77 -5.1
5,255,375 + ABID97_RS25360 0.77 -2.0
5,255,375 + ABID97_RS25360 0.77 -0.5
5,255,375 + ABID97_RS25360 0.77 -6.1
5,255,375 + ABID97_RS25360 0.77 -3.9
5,255,375 + ABID97_RS25360 0.77 -4.2
5,255,375 + ABID97_RS25360 0.77 -5.2
5,255,375 + ABID97_RS25360 0.77 -4.5
5,255,376 - ABID97_RS25360 0.77 -4.5
5,255,376 - ABID97_RS25360 0.77 +2.1
5,255,376 - ABID97_RS25360 0.77 -5.6
5,255,376 - ABID97_RS25360 0.77 -5.4
5,255,376 - ABID97_RS25360 0.77 -2.0
5,255,378 + ABID97_RS25360 0.77 -5.1
5,255,378 + ABID97_RS25360 0.77 -4.8
5,255,378 + ABID97_RS25360 0.77 -3.3
5,255,378 + ABID97_RS25360 0.77 -3.3
5,255,378 + ABID97_RS25360 0.77 -2.1
5,255,378 + ABID97_RS25360 0.77 -4.4
5,255,378 + ABID97_RS25360 0.77 -6.0
5,255,378 + ABID97_RS25360 0.77 -5.1
5,255,378 + ABID97_RS25360 0.77 -3.7
5,255,379 - ABID97_RS25360 0.77 -5.9
5,255,379 - ABID97_RS25360 0.77 -5.9
5,255,379 - ABID97_RS25360 0.77 -6.0
5,255,379 - ABID97_RS25360 0.77 -5.5
5,255,631 - -2.0
5,255,631 - -3.3
5,255,631 - -1.3
5,255,815 + ABID97_RS25365 0.19 -0.7
5,255,815 + ABID97_RS25365 0.19 -1.4
5,255,815 + ABID97_RS25365 0.19 -3.7
5,255,815 + ABID97_RS25365 0.19 -0.7
5,255,816 - ABID97_RS25365 0.19 -0.7
5,255,816 - ABID97_RS25365 0.19 -1.5
5,256,034 + ABID97_RS25365 0.47 -0.9
5,256,034 + ABID97_RS25365 0.47 -0.7
5,256,035 - ABID97_RS25365 0.47 -5.0
5,256,035 - ABID97_RS25365 0.47 -1.5
5,256,035 - ABID97_RS25365 0.47 -5.2
5,256,085 + ABID97_RS25365 0.53 -0.6
5,256,085 + ABID97_RS25365 0.53 -1.5
5,256,085 + ABID97_RS25365 0.53 -2.4
5,256,085 + ABID97_RS25365 0.53 -0.6
5,256,085 + ABID97_RS25365 0.53 +0.1
5,256,086 - ABID97_RS25365 0.53 -4.2
5,256,086 - ABID97_RS25365 0.53 -5.8
5,256,086 - ABID97_RS25365 0.53 -4.7
5,256,334 + ABID97_RS25365 0.84 -2.0
5,256,335 - ABID97_RS25365 0.84 -5.0
5,256,335 - ABID97_RS25365 0.84 -6.1
5,256,385 + -0.4
5,256,385 + -2.2
5,256,385 + -1.0
5,256,385 + +0.1
5,256,385 + -1.4
5,256,457 + -1.1
5,256,457 + -0.9
5,256,457 + -0.8
5,256,458 - -1.5
5,256,458 - -1.4
5,256,458 - -4.4
5,256,525 + -2.5
5,256,588 + ABID97_RS25370 0.13 -2.3
5,256,588 + ABID97_RS25370 0.13 -5.9
5,256,588 + ABID97_RS25370 0.13 -0.9
5,256,588 + ABID97_RS25370 0.13 -3.8
5,256,588 + ABID97_RS25370 0.13 -3.4
5,256,589 - ABID97_RS25370 0.13 -6.2
5,256,615 + ABID97_RS25370 0.16 -5.0
5,256,616 - ABID97_RS25370 0.16 -2.9
5,256,616 - ABID97_RS25370 0.16 -2.6

Or see this region's nucleotide sequence