Experiment: L-Phenylalanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS22615 and ABID97_RS22620 are separated by 72 nucleotides ABID97_RS22620 and ABID97_RS22625 are separated by 172 nucleotides
ABID97_RS22615: ABID97_RS22615 - tryptophan--tRNA ligase, at 4,682,513 to 4,683,841
_RS22615
ABID97_RS22620: ABID97_RS22620 - response regulator transcription factor, at 4,683,914 to 4,684,516
_RS22620
ABID97_RS22625: ABID97_RS22625 - HAMP domain-containing sensor histidine kinase, at 4,684,689 to 4,686,101
_RS22625
Position (kb)
4683
4684
4685 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 4683.863 kb on - strand at 4683.923 kb on + strand at 4683.923 kb on + strand at 4683.923 kb on + strand at 4683.924 kb on - strand at 4683.924 kb on - strand at 4683.997 kb on + strand, within ABID97_RS22620 at 4683.998 kb on - strand, within ABID97_RS22620 at 4683.998 kb on - strand, within ABID97_RS22620 at 4684.131 kb on - strand, within ABID97_RS22620 at 4684.155 kb on - strand, within ABID97_RS22620 at 4684.214 kb on + strand, within ABID97_RS22620 at 4684.215 kb on - strand, within ABID97_RS22620 at 4684.215 kb on - strand, within ABID97_RS22620 at 4684.482 kb on - strand at 4684.514 kb on + strand at 4684.515 kb on - strand at 4684.633 kb on + strand at 4684.882 kb on + strand, within ABID97_RS22625 at 4684.882 kb on + strand, within ABID97_RS22625 at 4684.882 kb on + strand, within ABID97_RS22625 at 4684.882 kb on + strand, within ABID97_RS22625 at 4684.883 kb on - strand, within ABID97_RS22625 at 4684.883 kb on - strand, within ABID97_RS22625 at 4685.005 kb on + strand, within ABID97_RS22625 at 4685.129 kb on - strand, within ABID97_RS22625
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (C) remove 4,683,863 - -0.1 4,683,923 + -2.1 4,683,923 + -4.7 4,683,923 + -4.0 4,683,924 - -2.5 4,683,924 - -4.6 4,683,997 + ABID97_RS22620 0.14 -4.0 4,683,998 - ABID97_RS22620 0.14 -3.5 4,683,998 - ABID97_RS22620 0.14 -4.1 4,684,131 - ABID97_RS22620 0.36 -3.1 4,684,155 - ABID97_RS22620 0.40 -1.1 4,684,214 + ABID97_RS22620 0.50 -4.3 4,684,215 - ABID97_RS22620 0.50 -3.8 4,684,215 - ABID97_RS22620 0.50 -3.6 4,684,482 - -3.6 4,684,514 + +1.9 4,684,515 - +1.2 4,684,633 + +0.6 4,684,882 + ABID97_RS22625 0.14 -3.6 4,684,882 + ABID97_RS22625 0.14 -4.5 4,684,882 + ABID97_RS22625 0.14 -3.0 4,684,882 + ABID97_RS22625 0.14 -4.1 4,684,883 - ABID97_RS22625 0.14 -3.1 4,684,883 - ABID97_RS22625 0.14 -1.7 4,685,005 + ABID97_RS22625 0.22 -1.2 4,685,129 - ABID97_RS22625 0.31 -3.8
Or see this region's nucleotide sequence