Strain Fitness in Variovorax sp. OAS795 around ABID97_RS20505

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS20490 and ABID97_RS20495 are separated by 15 nucleotidesABID97_RS20495 and ABID97_RS20500 are separated by 68 nucleotidesABID97_RS20500 and ABID97_RS20505 are separated by 117 nucleotidesABID97_RS20505 and ABID97_RS20510 are separated by 38 nucleotidesABID97_RS20510 and ABID97_RS20515 overlap by 7 nucleotides ABID97_RS20490: ABID97_RS20490 - NADH-quinone oxidoreductase subunit B, at 4,230,681 to 4,231,160 _RS20490 ABID97_RS20495: ABID97_RS20495 - NADH-quinone oxidoreductase subunit A, at 4,231,176 to 4,231,535 _RS20495 ABID97_RS20500: ABID97_RS20500 - tRNA-Leu, at 4,231,604 to 4,231,688 _RS20500 ABID97_RS20505: ABID97_RS20505 - preprotein translocase subunit SecG, at 4,231,806 to 4,232,222 _RS20505 ABID97_RS20510: ABID97_RS20510 - triose-phosphate isomerase, at 4,232,261 to 4,233,046 _RS20510 ABID97_RS20515: ABID97_RS20515 - NAD(P)H-quinone oxidoreductase, at 4,233,040 to 4,234,038 _RS20515 Position (kb) 4231 4232 4233Strain fitness (log2 ratio) -1 0 1 2 3 4at 4230.836 kb on - strand, within ABID97_RS20490at 4231.715 kb on - strandat 4231.756 kb on - strandat 4231.999 kb on + strand, within ABID97_RS20505at 4231.999 kb on + strand, within ABID97_RS20505at 4232.237 kb on - strandat 4232.237 kb on - strandat 4232.237 kb on - strandat 4232.241 kb on - strandat 4232.241 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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4,230,836 - ABID97_RS20490 0.32 +3.5
4,231,715 - +3.2
4,231,756 - +1.2
4,231,999 + ABID97_RS20505 0.46 +4.5
4,231,999 + ABID97_RS20505 0.46 +4.4
4,232,237 - +1.0
4,232,237 - +0.8
4,232,237 - +0.6
4,232,241 - +0.7
4,232,241 - -0.3

Or see this region's nucleotide sequence