Strain Fitness in Variovorax sp. OAS795 around ABID97_RS20005

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS20000 and ABID97_RS20005 are separated by 48 nucleotidesABID97_RS20005 and ABID97_RS20010 overlap by 4 nucleotidesABID97_RS20010 and ABID97_RS20015 are separated by 25 nucleotidesABID97_RS20015 and ABID97_RS20020 overlap by 101 nucleotides ABID97_RS20000: ABID97_RS20000 - circularly permuted type 2 ATP-grasp protein, at 4,134,108 to 4,136,861 _RS20000 ABID97_RS20005: ABID97_RS20005 - transglutaminase family protein, at 4,136,910 to 4,137,896 _RS20005 ABID97_RS20010: ABID97_RS20010 - RidA family protein, at 4,137,893 to 4,138,351 _RS20010 ABID97_RS20015: ABID97_RS20015 - hypothetical protein, at 4,138,377 to 4,138,757 _RS20015 ABID97_RS20020: ABID97_RS20020 - LacI family DNA-binding transcriptional regulator, at 4,138,657 to 4,139,682 _RS20020 Position (kb) 4136 4137 4138Strain fitness (log2 ratio) -2 -1 0 1at 4136.676 kb on + strandat 4136.946 kb on + strandat 4137.079 kb on - strand, within ABID97_RS20005at 4137.313 kb on - strand, within ABID97_RS20005at 4137.382 kb on - strand, within ABID97_RS20005at 4137.522 kb on + strand, within ABID97_RS20005at 4137.523 kb on - strand, within ABID97_RS20005at 4137.609 kb on + strand, within ABID97_RS20005at 4137.609 kb on + strand, within ABID97_RS20005at 4137.702 kb on + strand, within ABID97_RS20005at 4137.962 kb on + strand, within ABID97_RS20010

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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4,136,676 + -0.9
4,136,946 + -0.7
4,137,079 - ABID97_RS20005 0.17 -2.1
4,137,313 - ABID97_RS20005 0.41 -0.8
4,137,382 - ABID97_RS20005 0.48 -0.0
4,137,522 + ABID97_RS20005 0.62 -1.5
4,137,523 - ABID97_RS20005 0.62 -2.0
4,137,609 + ABID97_RS20005 0.71 -0.1
4,137,609 + ABID97_RS20005 0.71 -0.9
4,137,702 + ABID97_RS20005 0.80 -1.1
4,137,962 + ABID97_RS20010 0.15 -1.1

Or see this region's nucleotide sequence