Strain Fitness in Variovorax sp. OAS795 around ABID97_RS19095

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS19090 and ABID97_RS19095 are separated by 19 nucleotidesABID97_RS19095 and ABID97_RS19100 are separated by 6 nucleotidesABID97_RS19100 and ABID97_RS19105 overlap by 4 nucleotides ABID97_RS19090: ABID97_RS19090 - condensation domain-containing protein, at 3,936,551 to 3,938,947 _RS19090 ABID97_RS19095: ABID97_RS19095 - condensation domain-containing protein, at 3,938,967 to 3,941,564 _RS19095 ABID97_RS19100: ABID97_RS19100 - 4'-phosphopantetheinyl transferase superfamily protein, at 3,941,571 to 3,942,290 _RS19100 ABID97_RS19105: ABID97_RS19105 - alpha/beta hydrolase, at 3,942,287 to 3,943,105 _RS19105 Position (kb) 3938 3939 3940 3941 3942Strain fitness (log2 ratio) -1 0 1 2 3at 3938.429 kb on + strand, within ABID97_RS19090at 3938.438 kb on + strand, within ABID97_RS19090at 3938.438 kb on + strand, within ABID97_RS19090at 3938.474 kb on + strand, within ABID97_RS19090at 3939.117 kb on + strandat 3939.117 kb on + strandat 3939.118 kb on - strandat 3939.844 kb on - strand, within ABID97_RS19095at 3940.563 kb on + strand, within ABID97_RS19095at 3940.993 kb on - strand, within ABID97_RS19095at 3940.993 kb on - strand, within ABID97_RS19095at 3940.993 kb on - strand, within ABID97_RS19095at 3941.007 kb on + strand, within ABID97_RS19095at 3941.008 kb on - strand, within ABID97_RS19095at 3941.130 kb on + strand, within ABID97_RS19095at 3941.131 kb on - strand, within ABID97_RS19095at 3941.400 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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3,938,429 + ABID97_RS19090 0.78 +2.5
3,938,438 + ABID97_RS19090 0.79 +2.7
3,938,438 + ABID97_RS19090 0.79 +2.5
3,938,474 + ABID97_RS19090 0.80 +2.1
3,939,117 + +1.8
3,939,117 + +2.9
3,939,118 - +1.8
3,939,844 - ABID97_RS19095 0.34 +2.8
3,940,563 + ABID97_RS19095 0.61 +2.5
3,940,993 - ABID97_RS19095 0.78 +2.6
3,940,993 - ABID97_RS19095 0.78 +1.8
3,940,993 - ABID97_RS19095 0.78 +1.5
3,941,007 + ABID97_RS19095 0.79 +2.3
3,941,008 - ABID97_RS19095 0.79 +1.4
3,941,130 + ABID97_RS19095 0.83 +1.7
3,941,131 - ABID97_RS19095 0.83 +0.9
3,941,400 + +2.9

Or see this region's nucleotide sequence