Experiment: L-Phenylalanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS19090 and ABID97_RS19095 are separated by 19 nucleotides ABID97_RS19095 and ABID97_RS19100 are separated by 6 nucleotides ABID97_RS19100 and ABID97_RS19105 overlap by 4 nucleotides
ABID97_RS19090: ABID97_RS19090 - condensation domain-containing protein, at 3,936,551 to 3,938,947
_RS19090
ABID97_RS19095: ABID97_RS19095 - condensation domain-containing protein, at 3,938,967 to 3,941,564
_RS19095
ABID97_RS19100: ABID97_RS19100 - 4'-phosphopantetheinyl transferase superfamily protein, at 3,941,571 to 3,942,290
_RS19100
ABID97_RS19105: ABID97_RS19105 - alpha/beta hydrolase, at 3,942,287 to 3,943,105
_RS19105
Position (kb)
3938
3939
3940
3941
3942 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3938.429 kb on + strand, within ABID97_RS19090 at 3938.438 kb on + strand, within ABID97_RS19090 at 3938.438 kb on + strand, within ABID97_RS19090 at 3938.474 kb on + strand, within ABID97_RS19090 at 3939.117 kb on + strand at 3939.117 kb on + strand at 3939.118 kb on - strand at 3939.844 kb on - strand, within ABID97_RS19095 at 3940.563 kb on + strand, within ABID97_RS19095 at 3940.993 kb on - strand, within ABID97_RS19095 at 3940.993 kb on - strand, within ABID97_RS19095 at 3940.993 kb on - strand, within ABID97_RS19095 at 3941.007 kb on + strand, within ABID97_RS19095 at 3941.008 kb on - strand, within ABID97_RS19095 at 3941.130 kb on + strand, within ABID97_RS19095 at 3941.131 kb on - strand, within ABID97_RS19095 at 3941.400 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (C) remove 3,938,429 + ABID97_RS19090 0.78 +2.5 3,938,438 + ABID97_RS19090 0.79 +2.7 3,938,438 + ABID97_RS19090 0.79 +2.5 3,938,474 + ABID97_RS19090 0.80 +2.1 3,939,117 + +1.8 3,939,117 + +2.9 3,939,118 - +1.8 3,939,844 - ABID97_RS19095 0.34 +2.8 3,940,563 + ABID97_RS19095 0.61 +2.5 3,940,993 - ABID97_RS19095 0.78 +2.6 3,940,993 - ABID97_RS19095 0.78 +1.8 3,940,993 - ABID97_RS19095 0.78 +1.5 3,941,007 + ABID97_RS19095 0.79 +2.3 3,941,008 - ABID97_RS19095 0.79 +1.4 3,941,130 + ABID97_RS19095 0.83 +1.7 3,941,131 - ABID97_RS19095 0.83 +0.9 3,941,400 + +2.9
Or see this region's nucleotide sequence