Strain Fitness in Variovorax sp. OAS795 around ABID97_RS16330

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS16325 and ABID97_RS16330 overlap by 11 nucleotidesABID97_RS16330 and ABID97_RS16335 are separated by 1 nucleotidesABID97_RS16335 and ABID97_RS16340 are separated by 46 nucleotides ABID97_RS16325: ABID97_RS16325 - tRNA adenosine(34) deaminase TadA, at 3,381,340 to 3,382,455 _RS16325 ABID97_RS16330: ABID97_RS16330 - hypothetical protein, at 3,382,445 to 3,382,681 _RS16330 ABID97_RS16335: ABID97_RS16335 - FMN-binding negative transcriptional regulator, at 3,382,683 to 3,383,327 _RS16335 ABID97_RS16340: ABID97_RS16340 - ankyrin repeat domain-containing protein, at 3,383,374 to 3,384,069 _RS16340 Position (kb) 3382 3383Strain fitness (log2 ratio) -2 -1 0 1 2at 3382.774 kb on + strand, within ABID97_RS16335at 3382.774 kb on + strand, within ABID97_RS16335at 3382.775 kb on - strand, within ABID97_RS16335at 3383.023 kb on + strand, within ABID97_RS16335at 3383.023 kb on + strand, within ABID97_RS16335at 3383.023 kb on + strand, within ABID97_RS16335at 3383.023 kb on + strand, within ABID97_RS16335at 3383.024 kb on - strand, within ABID97_RS16335at 3383.024 kb on - strand, within ABID97_RS16335at 3383.024 kb on - strand, within ABID97_RS16335at 3383.024 kb on - strand, within ABID97_RS16335at 3383.074 kb on + strand, within ABID97_RS16335at 3383.075 kb on - strand, within ABID97_RS16335at 3383.323 kb on + strandat 3383.323 kb on + strandat 3383.323 kb on + strandat 3383.323 kb on + strandat 3383.323 kb on + strandat 3383.323 kb on + strandat 3383.323 kb on + strandat 3383.323 kb on + strandat 3383.323 kb on + strandat 3383.324 kb on - strandat 3383.324 kb on - strandat 3383.324 kb on - strandat 3383.324 kb on - strandat 3383.324 kb on - strandat 3383.324 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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3,382,774 + ABID97_RS16335 0.14 +0.2
3,382,774 + ABID97_RS16335 0.14 +0.1
3,382,775 - ABID97_RS16335 0.14 +0.4
3,383,023 + ABID97_RS16335 0.53 -0.0
3,383,023 + ABID97_RS16335 0.53 -0.2
3,383,023 + ABID97_RS16335 0.53 +0.2
3,383,023 + ABID97_RS16335 0.53 -2.3
3,383,024 - ABID97_RS16335 0.53 -0.3
3,383,024 - ABID97_RS16335 0.53 -0.4
3,383,024 - ABID97_RS16335 0.53 -1.4
3,383,024 - ABID97_RS16335 0.53 +0.1
3,383,074 + ABID97_RS16335 0.61 +0.1
3,383,075 - ABID97_RS16335 0.61 -0.3
3,383,323 + -0.1
3,383,323 + -0.0
3,383,323 + +0.2
3,383,323 + +2.6
3,383,323 + -0.3
3,383,323 + +0.3
3,383,323 + -0.2
3,383,323 + +0.1
3,383,323 + +0.6
3,383,324 - -1.1
3,383,324 - -0.1
3,383,324 - -0.0
3,383,324 - +0.2
3,383,324 - -0.5
3,383,324 - -0.3

Or see this region's nucleotide sequence