Strain Fitness in Variovorax sp. OAS795 around ABID97_RS11625

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS11615 and ABID97_RS11620 overlap by 4 nucleotidesABID97_RS11620 and ABID97_RS11625 are separated by 14 nucleotidesABID97_RS11625 and ABID97_RS11630 are separated by 40 nucleotidesABID97_RS11630 and ABID97_RS11635 are separated by 71 nucleotides ABID97_RS11615: ABID97_RS11615 - NAD(P)H-dependent oxidoreductase, at 2,399,689 to 2,400,267 _RS11615 ABID97_RS11620: ABID97_RS11620 - nitronate monooxygenase, at 2,400,264 to 2,401,196 _RS11620 ABID97_RS11625: ABID97_RS11625 - acyl-CoA dehydrogenase family protein, at 2,401,211 to 2,402,410 _RS11625 ABID97_RS11630: ABID97_RS11630 - SDR family oxidoreductase, at 2,402,451 to 2,403,242 _RS11630 ABID97_RS11635: ABID97_RS11635 - branched-chain amino acid ABC transporter substrate-binding protein, at 2,403,314 to 2,404,585 _RS11635 Position (kb) 2401 2402 2403Strain fitness (log2 ratio) -1 0 1 2 3at 2400.569 kb on - strand, within ABID97_RS11620at 2400.906 kb on - strand, within ABID97_RS11620at 2400.906 kb on - strand, within ABID97_RS11620at 2401.266 kb on + strandat 2401.328 kb on + strandat 2401.372 kb on - strand, within ABID97_RS11625at 2401.839 kb on - strand, within ABID97_RS11625at 2402.200 kb on + strand, within ABID97_RS11625at 2402.201 kb on - strand, within ABID97_RS11625at 2402.201 kb on - strand, within ABID97_RS11625at 2402.201 kb on - strand, within ABID97_RS11625at 2402.201 kb on - strand, within ABID97_RS11625at 2402.746 kb on + strand, within ABID97_RS11630at 2402.746 kb on + strand, within ABID97_RS11630at 2402.747 kb on - strand, within ABID97_RS11630at 2402.858 kb on + strand, within ABID97_RS11630at 2402.879 kb on + strand, within ABID97_RS11630

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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2,400,569 - ABID97_RS11620 0.33 +0.5
2,400,906 - ABID97_RS11620 0.69 +0.1
2,400,906 - ABID97_RS11620 0.69 -0.5
2,401,266 + -0.7
2,401,328 + -0.4
2,401,372 - ABID97_RS11625 0.13 +0.0
2,401,839 - ABID97_RS11625 0.52 +0.1
2,402,200 + ABID97_RS11625 0.82 +0.2
2,402,201 - ABID97_RS11625 0.82 +0.2
2,402,201 - ABID97_RS11625 0.82 +0.5
2,402,201 - ABID97_RS11625 0.82 +0.2
2,402,201 - ABID97_RS11625 0.82 +0.1
2,402,746 + ABID97_RS11630 0.37 -0.3
2,402,746 + ABID97_RS11630 0.37 -0.2
2,402,747 - ABID97_RS11630 0.37 +3.3
2,402,858 + ABID97_RS11630 0.51 -0.1
2,402,879 + ABID97_RS11630 0.54 -0.3

Or see this region's nucleotide sequence