Experiment: L-Phenylalanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS11615 and ABID97_RS11620 overlap by 4 nucleotides ABID97_RS11620 and ABID97_RS11625 are separated by 14 nucleotides ABID97_RS11625 and ABID97_RS11630 are separated by 40 nucleotides ABID97_RS11630 and ABID97_RS11635 are separated by 71 nucleotides
ABID97_RS11615: ABID97_RS11615 - NAD(P)H-dependent oxidoreductase, at 2,399,689 to 2,400,267
_RS11615
ABID97_RS11620: ABID97_RS11620 - nitronate monooxygenase, at 2,400,264 to 2,401,196
_RS11620
ABID97_RS11625: ABID97_RS11625 - acyl-CoA dehydrogenase family protein, at 2,401,211 to 2,402,410
_RS11625
ABID97_RS11630: ABID97_RS11630 - SDR family oxidoreductase, at 2,402,451 to 2,403,242
_RS11630
ABID97_RS11635: ABID97_RS11635 - branched-chain amino acid ABC transporter substrate-binding protein, at 2,403,314 to 2,404,585
_RS11635
Position (kb)
2401
2402
2403 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2400.569 kb on - strand, within ABID97_RS11620 at 2400.906 kb on - strand, within ABID97_RS11620 at 2400.906 kb on - strand, within ABID97_RS11620 at 2401.266 kb on + strand at 2401.328 kb on + strand at 2401.372 kb on - strand, within ABID97_RS11625 at 2401.839 kb on - strand, within ABID97_RS11625 at 2402.200 kb on + strand, within ABID97_RS11625 at 2402.201 kb on - strand, within ABID97_RS11625 at 2402.201 kb on - strand, within ABID97_RS11625 at 2402.201 kb on - strand, within ABID97_RS11625 at 2402.201 kb on - strand, within ABID97_RS11625 at 2402.746 kb on + strand, within ABID97_RS11630 at 2402.746 kb on + strand, within ABID97_RS11630 at 2402.747 kb on - strand, within ABID97_RS11630 at 2402.858 kb on + strand, within ABID97_RS11630 at 2402.879 kb on + strand, within ABID97_RS11630
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (C) remove 2,400,569 - ABID97_RS11620 0.33 +0.5 2,400,906 - ABID97_RS11620 0.69 +0.1 2,400,906 - ABID97_RS11620 0.69 -0.5 2,401,266 + -0.7 2,401,328 + -0.4 2,401,372 - ABID97_RS11625 0.13 +0.0 2,401,839 - ABID97_RS11625 0.52 +0.1 2,402,200 + ABID97_RS11625 0.82 +0.2 2,402,201 - ABID97_RS11625 0.82 +0.2 2,402,201 - ABID97_RS11625 0.82 +0.5 2,402,201 - ABID97_RS11625 0.82 +0.2 2,402,201 - ABID97_RS11625 0.82 +0.1 2,402,746 + ABID97_RS11630 0.37 -0.3 2,402,746 + ABID97_RS11630 0.37 -0.2 2,402,747 - ABID97_RS11630 0.37 +3.3 2,402,858 + ABID97_RS11630 0.51 -0.1 2,402,879 + ABID97_RS11630 0.54 -0.3
Or see this region's nucleotide sequence