Experiment: L-Phenylalanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS11120 and ABID97_RS11125 are separated by 106 nucleotides ABID97_RS11125 and ABID97_RS11130 are separated by 168 nucleotides ABID97_RS11130 and ABID97_RS11135 are separated by 24 nucleotides ABID97_RS11135 and ABID97_RS11140 are separated by 114 nucleotides
ABID97_RS11120: ABID97_RS11120 - threonine--tRNA ligase, at 2,300,553 to 2,302,460
_RS11120
ABID97_RS11125: ABID97_RS11125 - translation initiation factor IF-3, at 2,302,567 to 2,303,184
_RS11125
ABID97_RS11130: ABID97_RS11130 - 50S ribosomal protein L35, at 2,303,353 to 2,303,556
_RS11130
ABID97_RS11135: ABID97_RS11135 - 50S ribosomal protein L20, at 2,303,581 to 2,303,940
_RS11135
ABID97_RS11140: ABID97_RS11140 - phenylalanine--tRNA ligase subunit alpha, at 2,304,055 to 2,305,131
_RS11140
Position (kb)
2302
2303
2304 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2302.423 kb on + strand at 2302.423 kb on + strand at 2302.423 kb on + strand at 2302.471 kb on + strand at 2302.471 kb on + strand at 2302.482 kb on + strand at 2302.482 kb on + strand at 2302.482 kb on + strand at 2302.482 kb on + strand at 2302.482 kb on + strand at 2302.482 kb on + strand at 2302.482 kb on + strand at 2302.482 kb on + strand at 2302.482 kb on + strand at 2303.212 kb on + strand at 2303.212 kb on + strand at 2303.276 kb on + strand at 2303.276 kb on + strand at 2303.946 kb on + strand at 2303.946 kb on + strand at 2304.042 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (C) remove 2,302,423 + +0.3 2,302,423 + -1.4 2,302,423 + -0.5 2,302,471 + -3.2 2,302,471 + -0.5 2,302,482 + -1.0 2,302,482 + +0.0 2,302,482 + -0.1 2,302,482 + -0.3 2,302,482 + -0.8 2,302,482 + -1.4 2,302,482 + -0.9 2,302,482 + -0.1 2,302,482 + -0.6 2,303,212 + -0.4 2,303,212 + +0.8 2,303,276 + -0.5 2,303,276 + -0.4 2,303,946 + -0.4 2,303,946 + +0.5 2,304,042 + -1.8
Or see this region's nucleotide sequence