Strain Fitness in Variovorax sp. OAS795 around ABID97_RS11125

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS11120 and ABID97_RS11125 are separated by 106 nucleotidesABID97_RS11125 and ABID97_RS11130 are separated by 168 nucleotidesABID97_RS11130 and ABID97_RS11135 are separated by 24 nucleotidesABID97_RS11135 and ABID97_RS11140 are separated by 114 nucleotides ABID97_RS11120: ABID97_RS11120 - threonine--tRNA ligase, at 2,300,553 to 2,302,460 _RS11120 ABID97_RS11125: ABID97_RS11125 - translation initiation factor IF-3, at 2,302,567 to 2,303,184 _RS11125 ABID97_RS11130: ABID97_RS11130 - 50S ribosomal protein L35, at 2,303,353 to 2,303,556 _RS11130 ABID97_RS11135: ABID97_RS11135 - 50S ribosomal protein L20, at 2,303,581 to 2,303,940 _RS11135 ABID97_RS11140: ABID97_RS11140 - phenylalanine--tRNA ligase subunit alpha, at 2,304,055 to 2,305,131 _RS11140 Position (kb) 2302 2303 2304Strain fitness (log2 ratio) -3 -2 -1 0 1at 2302.423 kb on + strandat 2302.423 kb on + strandat 2302.423 kb on + strandat 2302.471 kb on + strandat 2302.471 kb on + strandat 2302.482 kb on + strandat 2302.482 kb on + strandat 2302.482 kb on + strandat 2302.482 kb on + strandat 2302.482 kb on + strandat 2302.482 kb on + strandat 2302.482 kb on + strandat 2302.482 kb on + strandat 2302.482 kb on + strandat 2303.212 kb on + strandat 2303.212 kb on + strandat 2303.276 kb on + strandat 2303.276 kb on + strandat 2303.946 kb on + strandat 2303.946 kb on + strandat 2304.042 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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2,302,423 + +0.3
2,302,423 + -1.4
2,302,423 + -0.5
2,302,471 + -3.2
2,302,471 + -0.5
2,302,482 + -1.0
2,302,482 + +0.0
2,302,482 + -0.1
2,302,482 + -0.3
2,302,482 + -0.8
2,302,482 + -1.4
2,302,482 + -0.9
2,302,482 + -0.1
2,302,482 + -0.6
2,303,212 + -0.4
2,303,212 + +0.8
2,303,276 + -0.5
2,303,276 + -0.4
2,303,946 + -0.4
2,303,946 + +0.5
2,304,042 + -1.8

Or see this region's nucleotide sequence