Experiment: L-Phenylalanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS11090 and ABID97_RS11095 are separated by 143 nucleotides ABID97_RS11095 and ABID97_RS11100 are separated by 260 nucleotides ABID97_RS11100 and ABID97_RS11105 are separated by 155 nucleotides
ABID97_RS11090: ABID97_RS11090 - tripartite tricarboxylate transporter substrate binding protein, at 2,294,630 to 2,295,613
_RS11090
ABID97_RS11095: ABID97_RS11095 - TetR/AcrR family transcriptional regulator, at 2,295,757 to 2,296,413
_RS11095
ABID97_RS11100: ABID97_RS11100 - SWIB/MDM2 domain-containing protein, at 2,296,674 to 2,297,120
_RS11100
ABID97_RS11105: ABID97_RS11105 - DMT family transporter, at 2,297,276 to 2,298,202
_RS11105
Position (kb)
2295
2296
2297 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2295.000 kb on + strand, within ABID97_RS11090 at 2295.001 kb on - strand, within ABID97_RS11090 at 2295.001 kb on - strand, within ABID97_RS11090 at 2295.001 kb on - strand, within ABID97_RS11090 at 2295.003 kb on + strand, within ABID97_RS11090 at 2295.003 kb on + strand, within ABID97_RS11090 at 2295.525 kb on + strand at 2295.526 kb on - strand at 2295.526 kb on - strand at 2295.721 kb on - strand at 2295.770 kb on + strand at 2295.770 kb on + strand at 2295.771 kb on - strand at 2295.875 kb on + strand, within ABID97_RS11095 at 2295.876 kb on - strand, within ABID97_RS11095 at 2295.876 kb on - strand, within ABID97_RS11095 at 2295.882 kb on - strand, within ABID97_RS11095 at 2295.905 kb on + strand, within ABID97_RS11095 at 2295.905 kb on + strand, within ABID97_RS11095 at 2295.905 kb on + strand, within ABID97_RS11095 at 2295.906 kb on - strand, within ABID97_RS11095 at 2296.088 kb on + strand, within ABID97_RS11095 at 2296.088 kb on + strand, within ABID97_RS11095 at 2296.088 kb on + strand, within ABID97_RS11095 at 2296.088 kb on + strand, within ABID97_RS11095 at 2296.088 kb on + strand, within ABID97_RS11095 at 2296.091 kb on + strand, within ABID97_RS11095 at 2296.091 kb on + strand, within ABID97_RS11095 at 2296.091 kb on + strand, within ABID97_RS11095 at 2296.092 kb on - strand, within ABID97_RS11095 at 2296.092 kb on - strand, within ABID97_RS11095 at 2296.092 kb on - strand, within ABID97_RS11095 at 2296.184 kb on + strand, within ABID97_RS11095 at 2296.233 kb on - strand, within ABID97_RS11095 at 2296.233 kb on - strand, within ABID97_RS11095 at 2296.238 kb on + strand, within ABID97_RS11095 at 2296.239 kb on - strand, within ABID97_RS11095 at 2296.239 kb on - strand, within ABID97_RS11095 at 2296.239 kb on - strand, within ABID97_RS11095 at 2296.239 kb on - strand, within ABID97_RS11095 at 2296.469 kb on + strand at 2296.470 kb on - strand at 2296.470 kb on - strand at 2296.513 kb on + strand at 2296.513 kb on + strand at 2296.675 kb on + strand at 2296.676 kb on - strand at 2297.190 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (C) remove 2,295,000 + ABID97_RS11090 0.38 -1.9 2,295,001 - ABID97_RS11090 0.38 -0.3 2,295,001 - ABID97_RS11090 0.38 -0.3 2,295,001 - ABID97_RS11090 0.38 -0.1 2,295,003 + ABID97_RS11090 0.38 -1.3 2,295,003 + ABID97_RS11090 0.38 -0.2 2,295,525 + -0.1 2,295,526 - -0.3 2,295,526 - -0.4 2,295,721 - -0.2 2,295,770 + -1.3 2,295,770 + -1.1 2,295,771 - -1.4 2,295,875 + ABID97_RS11095 0.18 -1.2 2,295,876 - ABID97_RS11095 0.18 -1.0 2,295,876 - ABID97_RS11095 0.18 -0.4 2,295,882 - ABID97_RS11095 0.19 -1.9 2,295,905 + ABID97_RS11095 0.23 -0.9 2,295,905 + ABID97_RS11095 0.23 -1.5 2,295,905 + ABID97_RS11095 0.23 -0.9 2,295,906 - ABID97_RS11095 0.23 -0.8 2,296,088 + ABID97_RS11095 0.50 -1.3 2,296,088 + ABID97_RS11095 0.50 -0.3 2,296,088 + ABID97_RS11095 0.50 +0.0 2,296,088 + ABID97_RS11095 0.50 -1.2 2,296,088 + ABID97_RS11095 0.50 -1.2 2,296,091 + ABID97_RS11095 0.51 -0.6 2,296,091 + ABID97_RS11095 0.51 -1.1 2,296,091 + ABID97_RS11095 0.51 -1.3 2,296,092 - ABID97_RS11095 0.51 -1.2 2,296,092 - ABID97_RS11095 0.51 -1.6 2,296,092 - ABID97_RS11095 0.51 -1.3 2,296,184 + ABID97_RS11095 0.65 +1.0 2,296,233 - ABID97_RS11095 0.72 -1.0 2,296,233 - ABID97_RS11095 0.72 -1.2 2,296,238 + ABID97_RS11095 0.73 -0.9 2,296,239 - ABID97_RS11095 0.73 -1.0 2,296,239 - ABID97_RS11095 0.73 -1.9 2,296,239 - ABID97_RS11095 0.73 -1.0 2,296,239 - ABID97_RS11095 0.73 -1.8 2,296,469 + -0.1 2,296,470 - +0.2 2,296,470 - +1.0 2,296,513 + -0.1 2,296,513 + +0.2 2,296,675 + +0.5 2,296,676 - +0.5 2,297,190 + +1.9
Or see this region's nucleotide sequence