Strain Fitness in Variovorax sp. OAS795 around ABID97_RS11095

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS11090 and ABID97_RS11095 are separated by 143 nucleotidesABID97_RS11095 and ABID97_RS11100 are separated by 260 nucleotidesABID97_RS11100 and ABID97_RS11105 are separated by 155 nucleotides ABID97_RS11090: ABID97_RS11090 - tripartite tricarboxylate transporter substrate binding protein, at 2,294,630 to 2,295,613 _RS11090 ABID97_RS11095: ABID97_RS11095 - TetR/AcrR family transcriptional regulator, at 2,295,757 to 2,296,413 _RS11095 ABID97_RS11100: ABID97_RS11100 - SWIB/MDM2 domain-containing protein, at 2,296,674 to 2,297,120 _RS11100 ABID97_RS11105: ABID97_RS11105 - DMT family transporter, at 2,297,276 to 2,298,202 _RS11105 Position (kb) 2295 2296 2297Strain fitness (log2 ratio) -2 -1 0 1 2at 2295.000 kb on + strand, within ABID97_RS11090at 2295.001 kb on - strand, within ABID97_RS11090at 2295.001 kb on - strand, within ABID97_RS11090at 2295.001 kb on - strand, within ABID97_RS11090at 2295.003 kb on + strand, within ABID97_RS11090at 2295.003 kb on + strand, within ABID97_RS11090at 2295.525 kb on + strandat 2295.526 kb on - strandat 2295.526 kb on - strandat 2295.721 kb on - strandat 2295.770 kb on + strandat 2295.770 kb on + strandat 2295.771 kb on - strandat 2295.875 kb on + strand, within ABID97_RS11095at 2295.876 kb on - strand, within ABID97_RS11095at 2295.876 kb on - strand, within ABID97_RS11095at 2295.882 kb on - strand, within ABID97_RS11095at 2295.905 kb on + strand, within ABID97_RS11095at 2295.905 kb on + strand, within ABID97_RS11095at 2295.905 kb on + strand, within ABID97_RS11095at 2295.906 kb on - strand, within ABID97_RS11095at 2296.088 kb on + strand, within ABID97_RS11095at 2296.088 kb on + strand, within ABID97_RS11095at 2296.088 kb on + strand, within ABID97_RS11095at 2296.088 kb on + strand, within ABID97_RS11095at 2296.088 kb on + strand, within ABID97_RS11095at 2296.091 kb on + strand, within ABID97_RS11095at 2296.091 kb on + strand, within ABID97_RS11095at 2296.091 kb on + strand, within ABID97_RS11095at 2296.092 kb on - strand, within ABID97_RS11095at 2296.092 kb on - strand, within ABID97_RS11095at 2296.092 kb on - strand, within ABID97_RS11095at 2296.184 kb on + strand, within ABID97_RS11095at 2296.233 kb on - strand, within ABID97_RS11095at 2296.233 kb on - strand, within ABID97_RS11095at 2296.238 kb on + strand, within ABID97_RS11095at 2296.239 kb on - strand, within ABID97_RS11095at 2296.239 kb on - strand, within ABID97_RS11095at 2296.239 kb on - strand, within ABID97_RS11095at 2296.239 kb on - strand, within ABID97_RS11095at 2296.469 kb on + strandat 2296.470 kb on - strandat 2296.470 kb on - strandat 2296.513 kb on + strandat 2296.513 kb on + strandat 2296.675 kb on + strandat 2296.676 kb on - strandat 2297.190 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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2,295,000 + ABID97_RS11090 0.38 -1.9
2,295,001 - ABID97_RS11090 0.38 -0.3
2,295,001 - ABID97_RS11090 0.38 -0.3
2,295,001 - ABID97_RS11090 0.38 -0.1
2,295,003 + ABID97_RS11090 0.38 -1.3
2,295,003 + ABID97_RS11090 0.38 -0.2
2,295,525 + -0.1
2,295,526 - -0.3
2,295,526 - -0.4
2,295,721 - -0.2
2,295,770 + -1.3
2,295,770 + -1.1
2,295,771 - -1.4
2,295,875 + ABID97_RS11095 0.18 -1.2
2,295,876 - ABID97_RS11095 0.18 -1.0
2,295,876 - ABID97_RS11095 0.18 -0.4
2,295,882 - ABID97_RS11095 0.19 -1.9
2,295,905 + ABID97_RS11095 0.23 -0.9
2,295,905 + ABID97_RS11095 0.23 -1.5
2,295,905 + ABID97_RS11095 0.23 -0.9
2,295,906 - ABID97_RS11095 0.23 -0.8
2,296,088 + ABID97_RS11095 0.50 -1.3
2,296,088 + ABID97_RS11095 0.50 -0.3
2,296,088 + ABID97_RS11095 0.50 +0.0
2,296,088 + ABID97_RS11095 0.50 -1.2
2,296,088 + ABID97_RS11095 0.50 -1.2
2,296,091 + ABID97_RS11095 0.51 -0.6
2,296,091 + ABID97_RS11095 0.51 -1.1
2,296,091 + ABID97_RS11095 0.51 -1.3
2,296,092 - ABID97_RS11095 0.51 -1.2
2,296,092 - ABID97_RS11095 0.51 -1.6
2,296,092 - ABID97_RS11095 0.51 -1.3
2,296,184 + ABID97_RS11095 0.65 +1.0
2,296,233 - ABID97_RS11095 0.72 -1.0
2,296,233 - ABID97_RS11095 0.72 -1.2
2,296,238 + ABID97_RS11095 0.73 -0.9
2,296,239 - ABID97_RS11095 0.73 -1.0
2,296,239 - ABID97_RS11095 0.73 -1.9
2,296,239 - ABID97_RS11095 0.73 -1.0
2,296,239 - ABID97_RS11095 0.73 -1.8
2,296,469 + -0.1
2,296,470 - +0.2
2,296,470 - +1.0
2,296,513 + -0.1
2,296,513 + +0.2
2,296,675 + +0.5
2,296,676 - +0.5
2,297,190 + +1.9

Or see this region's nucleotide sequence