Strain Fitness in Variovorax sp. OAS795 around ABID97_RS09760

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS09740 and ABID97_RS09745 are separated by 1 nucleotidesABID97_RS09745 and ABID97_RS09750 overlap by 4 nucleotidesABID97_RS09750 and ABID97_RS09755 are separated by 14 nucleotidesABID97_RS09755 and ABID97_RS09760 overlap by 1 nucleotidesABID97_RS09760 and ABID97_RS09765 overlap by 4 nucleotidesABID97_RS09765 and ABID97_RS09770 overlap by 4 nucleotides ABID97_RS09740: ABID97_RS09740 - phage tail tube protein, at 2,031,673 to 2,032,323 _RS09740 ABID97_RS09745: ABID97_RS09745 - hypothetical protein, at 2,032,325 to 2,032,552 _RS09745 ABID97_RS09750: ABID97_RS09750 - hypothetical protein, at 2,032,549 to 2,032,911 _RS09750 ABID97_RS09755: ABID97_RS09755 - hypothetical protein, at 2,032,926 to 2,033,192 _RS09755 ABID97_RS09760: ABID97_RS09760 - hypothetical protein, at 2,033,192 to 2,036,677 _RS09760 ABID97_RS09765: ABID97_RS09765 - DUF2163 domain-containing protein, at 2,036,674 to 2,037,549 _RS09765 ABID97_RS09770: ABID97_RS09770 - NlpC/P60 family protein, at 2,037,546 to 2,038,025 _RS09770 Position (kb) 2033 2034 2035 2036 2037Strain fitness (log2 ratio) -2 -1 0 1at 2032.636 kb on + strand, within ABID97_RS09750at 2033.190 kb on + strandat 2033.191 kb on - strandat 2033.247 kb on - strandat 2033.354 kb on - strandat 2033.820 kb on - strand, within ABID97_RS09760at 2034.239 kb on + strand, within ABID97_RS09760at 2034.524 kb on + strand, within ABID97_RS09760at 2034.557 kb on + strand, within ABID97_RS09760at 2034.557 kb on + strand, within ABID97_RS09760at 2034.558 kb on - strand, within ABID97_RS09760at 2034.560 kb on + strand, within ABID97_RS09760at 2034.561 kb on - strand, within ABID97_RS09760at 2034.561 kb on - strand, within ABID97_RS09760at 2034.615 kb on - strand, within ABID97_RS09760at 2035.576 kb on - strand, within ABID97_RS09760at 2035.641 kb on + strand, within ABID97_RS09760at 2035.895 kb on + strand, within ABID97_RS09760at 2035.895 kb on + strand, within ABID97_RS09760at 2035.896 kb on - strand, within ABID97_RS09760at 2035.896 kb on - strand, within ABID97_RS09760at 2035.952 kb on + strand, within ABID97_RS09760at 2035.952 kb on + strand, within ABID97_RS09760at 2036.042 kb on + strand, within ABID97_RS09760at 2036.097 kb on - strand, within ABID97_RS09760at 2036.114 kb on + strand, within ABID97_RS09760at 2036.558 kb on + strandat 2036.558 kb on + strandat 2036.983 kb on + strand, within ABID97_RS09765at 2037.160 kb on + strand, within ABID97_RS09765at 2037.161 kb on - strand, within ABID97_RS09765at 2037.161 kb on - strand, within ABID97_RS09765at 2037.300 kb on + strand, within ABID97_RS09765at 2037.403 kb on + strand, within ABID97_RS09765at 2037.657 kb on + strand, within ABID97_RS09770

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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2,032,636 + ABID97_RS09750 0.24 -0.8
2,033,190 + -0.4
2,033,191 - +0.5
2,033,247 - +1.0
2,033,354 - +0.1
2,033,820 - ABID97_RS09760 0.18 -0.2
2,034,239 + ABID97_RS09760 0.30 -0.4
2,034,524 + ABID97_RS09760 0.38 -0.7
2,034,557 + ABID97_RS09760 0.39 -0.0
2,034,557 + ABID97_RS09760 0.39 +1.2
2,034,558 - ABID97_RS09760 0.39 -0.5
2,034,560 + ABID97_RS09760 0.39 +1.0
2,034,561 - ABID97_RS09760 0.39 +0.5
2,034,561 - ABID97_RS09760 0.39 -1.8
2,034,615 - ABID97_RS09760 0.41 +1.0
2,035,576 - ABID97_RS09760 0.68 +0.1
2,035,641 + ABID97_RS09760 0.70 -1.4
2,035,895 + ABID97_RS09760 0.78 -1.6
2,035,895 + ABID97_RS09760 0.78 -0.3
2,035,896 - ABID97_RS09760 0.78 -0.2
2,035,896 - ABID97_RS09760 0.78 +0.2
2,035,952 + ABID97_RS09760 0.79 -0.7
2,035,952 + ABID97_RS09760 0.79 -0.6
2,036,042 + ABID97_RS09760 0.82 -0.3
2,036,097 - ABID97_RS09760 0.83 -0.6
2,036,114 + ABID97_RS09760 0.84 -0.2
2,036,558 + -0.3
2,036,558 + +0.3
2,036,983 + ABID97_RS09765 0.35 +0.4
2,037,160 + ABID97_RS09765 0.55 -0.5
2,037,161 - ABID97_RS09765 0.56 +1.3
2,037,161 - ABID97_RS09765 0.56 -1.5
2,037,300 + ABID97_RS09765 0.71 +0.0
2,037,403 + ABID97_RS09765 0.83 -1.4
2,037,657 + ABID97_RS09770 0.23 +0.4

Or see this region's nucleotide sequence