Experiment: L-Phenylalanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS09740 and ABID97_RS09745 are separated by 1 nucleotides ABID97_RS09745 and ABID97_RS09750 overlap by 4 nucleotides ABID97_RS09750 and ABID97_RS09755 are separated by 14 nucleotides ABID97_RS09755 and ABID97_RS09760 overlap by 1 nucleotides ABID97_RS09760 and ABID97_RS09765 overlap by 4 nucleotides ABID97_RS09765 and ABID97_RS09770 overlap by 4 nucleotides
ABID97_RS09740: ABID97_RS09740 - phage tail tube protein, at 2,031,673 to 2,032,323
_RS09740
ABID97_RS09745: ABID97_RS09745 - hypothetical protein, at 2,032,325 to 2,032,552
_RS09745
ABID97_RS09750: ABID97_RS09750 - hypothetical protein, at 2,032,549 to 2,032,911
_RS09750
ABID97_RS09755: ABID97_RS09755 - hypothetical protein, at 2,032,926 to 2,033,192
_RS09755
ABID97_RS09760: ABID97_RS09760 - hypothetical protein, at 2,033,192 to 2,036,677
_RS09760
ABID97_RS09765: ABID97_RS09765 - DUF2163 domain-containing protein, at 2,036,674 to 2,037,549
_RS09765
ABID97_RS09770: ABID97_RS09770 - NlpC/P60 family protein, at 2,037,546 to 2,038,025
_RS09770
Position (kb)
2033
2034
2035
2036
2037 Strain fitness (log2 ratio)
-2
-1
0
1 at 2032.636 kb on + strand, within ABID97_RS09750 at 2033.190 kb on + strand at 2033.191 kb on - strand at 2033.247 kb on - strand at 2033.354 kb on - strand at 2033.820 kb on - strand, within ABID97_RS09760 at 2034.239 kb on + strand, within ABID97_RS09760 at 2034.524 kb on + strand, within ABID97_RS09760 at 2034.557 kb on + strand, within ABID97_RS09760 at 2034.557 kb on + strand, within ABID97_RS09760 at 2034.558 kb on - strand, within ABID97_RS09760 at 2034.560 kb on + strand, within ABID97_RS09760 at 2034.561 kb on - strand, within ABID97_RS09760 at 2034.561 kb on - strand, within ABID97_RS09760 at 2034.615 kb on - strand, within ABID97_RS09760 at 2035.576 kb on - strand, within ABID97_RS09760 at 2035.641 kb on + strand, within ABID97_RS09760 at 2035.895 kb on + strand, within ABID97_RS09760 at 2035.895 kb on + strand, within ABID97_RS09760 at 2035.896 kb on - strand, within ABID97_RS09760 at 2035.896 kb on - strand, within ABID97_RS09760 at 2035.952 kb on + strand, within ABID97_RS09760 at 2035.952 kb on + strand, within ABID97_RS09760 at 2036.042 kb on + strand, within ABID97_RS09760 at 2036.097 kb on - strand, within ABID97_RS09760 at 2036.114 kb on + strand, within ABID97_RS09760 at 2036.558 kb on + strand at 2036.558 kb on + strand at 2036.983 kb on + strand, within ABID97_RS09765 at 2037.160 kb on + strand, within ABID97_RS09765 at 2037.161 kb on - strand, within ABID97_RS09765 at 2037.161 kb on - strand, within ABID97_RS09765 at 2037.300 kb on + strand, within ABID97_RS09765 at 2037.403 kb on + strand, within ABID97_RS09765 at 2037.657 kb on + strand, within ABID97_RS09770
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (C) remove 2,032,636 + ABID97_RS09750 0.24 -0.8 2,033,190 + -0.4 2,033,191 - +0.5 2,033,247 - +1.0 2,033,354 - +0.1 2,033,820 - ABID97_RS09760 0.18 -0.2 2,034,239 + ABID97_RS09760 0.30 -0.4 2,034,524 + ABID97_RS09760 0.38 -0.7 2,034,557 + ABID97_RS09760 0.39 -0.0 2,034,557 + ABID97_RS09760 0.39 +1.2 2,034,558 - ABID97_RS09760 0.39 -0.5 2,034,560 + ABID97_RS09760 0.39 +1.0 2,034,561 - ABID97_RS09760 0.39 +0.5 2,034,561 - ABID97_RS09760 0.39 -1.8 2,034,615 - ABID97_RS09760 0.41 +1.0 2,035,576 - ABID97_RS09760 0.68 +0.1 2,035,641 + ABID97_RS09760 0.70 -1.4 2,035,895 + ABID97_RS09760 0.78 -1.6 2,035,895 + ABID97_RS09760 0.78 -0.3 2,035,896 - ABID97_RS09760 0.78 -0.2 2,035,896 - ABID97_RS09760 0.78 +0.2 2,035,952 + ABID97_RS09760 0.79 -0.7 2,035,952 + ABID97_RS09760 0.79 -0.6 2,036,042 + ABID97_RS09760 0.82 -0.3 2,036,097 - ABID97_RS09760 0.83 -0.6 2,036,114 + ABID97_RS09760 0.84 -0.2 2,036,558 + -0.3 2,036,558 + +0.3 2,036,983 + ABID97_RS09765 0.35 +0.4 2,037,160 + ABID97_RS09765 0.55 -0.5 2,037,161 - ABID97_RS09765 0.56 +1.3 2,037,161 - ABID97_RS09765 0.56 -1.5 2,037,300 + ABID97_RS09765 0.71 +0.0 2,037,403 + ABID97_RS09765 0.83 -1.4 2,037,657 + ABID97_RS09770 0.23 +0.4
Or see this region's nucleotide sequence