Strain Fitness in Variovorax sp. OAS795 around ABID97_RS08215

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS08210 and ABID97_RS08215 are separated by 174 nucleotidesABID97_RS08215 and ABID97_RS08220 are separated by 31 nucleotides ABID97_RS08210: ABID97_RS08210 - MFS transporter, at 1,724,809 to 1,726,056 _RS08210 ABID97_RS08215: ABID97_RS08215 - hypothetical protein, at 1,726,231 to 1,726,761 _RS08215 ABID97_RS08220: ABID97_RS08220 - phosphoenolpyruvate carboxylase, at 1,726,793 to 1,729,639 _RS08220 Position (kb) 1726 1727Strain fitness (log2 ratio) -2 -1 0 1 2at 1725.248 kb on + strand, within ABID97_RS08210at 1725.248 kb on + strand, within ABID97_RS08210at 1725.248 kb on + strand, within ABID97_RS08210at 1725.249 kb on - strand, within ABID97_RS08210at 1725.317 kb on + strand, within ABID97_RS08210at 1725.318 kb on - strand, within ABID97_RS08210at 1725.318 kb on - strand, within ABID97_RS08210at 1725.323 kb on + strand, within ABID97_RS08210at 1725.324 kb on - strand, within ABID97_RS08210at 1725.324 kb on - strand, within ABID97_RS08210at 1725.324 kb on - strand, within ABID97_RS08210at 1726.166 kb on + strandat 1726.679 kb on + strand, within ABID97_RS08215at 1726.680 kb on - strand, within ABID97_RS08215at 1726.926 kb on + strandat 1726.927 kb on - strandat 1727.173 kb on - strand, within ABID97_RS08220at 1727.173 kb on - strand, within ABID97_RS08220at 1727.415 kb on + strand, within ABID97_RS08220at 1727.416 kb on - strand, within ABID97_RS08220at 1727.599 kb on - strand, within ABID97_RS08220

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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1,725,248 + ABID97_RS08210 0.35 -2.1
1,725,248 + ABID97_RS08210 0.35 -0.4
1,725,248 + ABID97_RS08210 0.35 +0.2
1,725,249 - ABID97_RS08210 0.35 -0.2
1,725,317 + ABID97_RS08210 0.41 +0.5
1,725,318 - ABID97_RS08210 0.41 -0.8
1,725,318 - ABID97_RS08210 0.41 -0.1
1,725,323 + ABID97_RS08210 0.41 +0.0
1,725,324 - ABID97_RS08210 0.41 +0.5
1,725,324 - ABID97_RS08210 0.41 -0.0
1,725,324 - ABID97_RS08210 0.41 +0.2
1,726,166 + +1.3
1,726,679 + ABID97_RS08215 0.84 -0.9
1,726,680 - ABID97_RS08215 0.85 -0.9
1,726,926 + -1.2
1,726,927 - -0.1
1,727,173 - ABID97_RS08220 0.13 -0.9
1,727,173 - ABID97_RS08220 0.13 -0.9
1,727,415 + ABID97_RS08220 0.22 +2.5
1,727,416 - ABID97_RS08220 0.22 -0.5
1,727,599 - ABID97_RS08220 0.28 -0.9

Or see this region's nucleotide sequence