Strain Fitness in Variovorax sp. OAS795 around ABID97_RS05275

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS05265 and ABID97_RS05270 are separated by 16 nucleotidesABID97_RS05270 and ABID97_RS05275 are separated by 21 nucleotidesABID97_RS05275 and ABID97_RS05280 are separated by 29 nucleotidesABID97_RS05280 and ABID97_RS05285 overlap by 4 nucleotides ABID97_RS05265: ABID97_RS05265 - low-specificity L-threonine aldolase, at 1,103,538 to 1,104,596 _RS05265 ABID97_RS05270: ABID97_RS05270 - LysE family translocator, at 1,104,613 to 1,105,275 _RS05270 ABID97_RS05275: ABID97_RS05275 - anthranilate phosphoribosyltransferase, at 1,105,297 to 1,106,319 _RS05275 ABID97_RS05280: ABID97_RS05280 - indole-3-glycerol phosphate synthase TrpC, at 1,106,349 to 1,107,149 _RS05280 ABID97_RS05285: ABID97_RS05285 - uracil-DNA glycosylase, at 1,107,146 to 1,107,853 _RS05285 Position (kb) 1105 1106 1107Strain fitness (log2 ratio) -2 -1 0 1at 1104.691 kb on + strand, within ABID97_RS05270at 1104.691 kb on + strand, within ABID97_RS05270at 1104.691 kb on + strand, within ABID97_RS05270at 1104.692 kb on - strand, within ABID97_RS05270at 1104.844 kb on + strand, within ABID97_RS05270at 1104.844 kb on + strand, within ABID97_RS05270at 1104.845 kb on - strand, within ABID97_RS05270at 1104.845 kb on - strand, within ABID97_RS05270at 1104.868 kb on + strand, within ABID97_RS05270at 1104.868 kb on + strand, within ABID97_RS05270at 1105.960 kb on + strand, within ABID97_RS05275at 1105.961 kb on - strand, within ABID97_RS05275at 1106.200 kb on + strand, within ABID97_RS05275at 1106.201 kb on - strand, within ABID97_RS05275at 1106.595 kb on + strand, within ABID97_RS05280at 1106.596 kb on - strand, within ABID97_RS05280at 1106.596 kb on - strand, within ABID97_RS05280at 1106.596 kb on - strand, within ABID97_RS05280at 1106.742 kb on + strand, within ABID97_RS05280at 1106.827 kb on - strand, within ABID97_RS05280

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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1,104,691 + ABID97_RS05270 0.12 +0.3
1,104,691 + ABID97_RS05270 0.12 +0.4
1,104,691 + ABID97_RS05270 0.12 +0.3
1,104,692 - ABID97_RS05270 0.12 +0.8
1,104,844 + ABID97_RS05270 0.35 -1.7
1,104,844 + ABID97_RS05270 0.35 +0.1
1,104,845 - ABID97_RS05270 0.35 -2.6
1,104,845 - ABID97_RS05270 0.35 -0.1
1,104,868 + ABID97_RS05270 0.38 -0.8
1,104,868 + ABID97_RS05270 0.38 -0.1
1,105,960 + ABID97_RS05275 0.65 -1.7
1,105,961 - ABID97_RS05275 0.65 -0.3
1,106,200 + ABID97_RS05275 0.88 +0.5
1,106,201 - ABID97_RS05275 0.88 -1.4
1,106,595 + ABID97_RS05280 0.31 -0.9
1,106,596 - ABID97_RS05280 0.31 -0.3
1,106,596 - ABID97_RS05280 0.31 +0.5
1,106,596 - ABID97_RS05280 0.31 -1.4
1,106,742 + ABID97_RS05280 0.49 -1.1
1,106,827 - ABID97_RS05280 0.60 +0.5

Or see this region's nucleotide sequence