Strain Fitness in Variovorax sp. OAS795 around ABID97_RS05185

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS05175 and ABID97_RS05180 are separated by 32 nucleotidesABID97_RS05180 and ABID97_RS05185 are separated by 69 nucleotidesABID97_RS05185 and ABID97_RS05190 are separated by 71 nucleotidesABID97_RS05190 and ABID97_RS05195 are separated by 17 nucleotides ABID97_RS05175: ABID97_RS05175 - type VI secretion system contractile sheath large subunit, at 1,089,264 to 1,090,760 _RS05175 ABID97_RS05180: ABID97_RS05180 - type VI secretion system contractile sheath small subunit, at 1,090,793 to 1,091,308 _RS05180 ABID97_RS05185: ABID97_RS05185 - type VI secretion system protein TssA, at 1,091,378 to 1,092,409 _RS05185 ABID97_RS05190: ABID97_RS05190 - type VI secretion system lipoprotein TssJ, at 1,092,481 to 1,092,999 _RS05190 ABID97_RS05195: ABID97_RS05195 - type VI secretion system protein, at 1,093,017 to 1,094,135 _RS05195 Position (kb) 1091 1092 1093Strain fitness (log2 ratio) -2 -1 0 1 2at 1090.456 kb on + strand, within ABID97_RS05175at 1090.457 kb on - strand, within ABID97_RS05175at 1090.457 kb on - strand, within ABID97_RS05175at 1090.457 kb on - strand, within ABID97_RS05175at 1090.457 kb on - strand, within ABID97_RS05175at 1090.457 kb on - strand, within ABID97_RS05175at 1091.980 kb on - strand, within ABID97_RS05185at 1092.077 kb on + strand, within ABID97_RS05185at 1092.077 kb on + strand, within ABID97_RS05185at 1092.078 kb on - strand, within ABID97_RS05185at 1092.078 kb on - strand, within ABID97_RS05185at 1092.078 kb on - strand, within ABID97_RS05185at 1092.078 kb on - strand, within ABID97_RS05185at 1092.078 kb on - strandat 1092.333 kb on + strandat 1092.496 kb on - strandat 1092.499 kb on + strandat 1092.499 kb on + strandat 1092.500 kb on - strandat 1092.500 kb on - strandat 1092.998 kb on - strandat 1093.147 kb on + strand, within ABID97_RS05195

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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1,090,456 + ABID97_RS05175 0.80 +0.3
1,090,457 - ABID97_RS05175 0.80 -1.9
1,090,457 - ABID97_RS05175 0.80 -0.7
1,090,457 - ABID97_RS05175 0.80 -0.5
1,090,457 - ABID97_RS05175 0.80 -0.4
1,090,457 - ABID97_RS05175 0.80 -1.1
1,091,980 - ABID97_RS05185 0.58 -0.5
1,092,077 + ABID97_RS05185 0.68 -1.7
1,092,077 + ABID97_RS05185 0.68 +0.3
1,092,078 - ABID97_RS05185 0.68 -0.4
1,092,078 - ABID97_RS05185 0.68 -0.5
1,092,078 - ABID97_RS05185 0.68 -0.4
1,092,078 - ABID97_RS05185 0.68 -0.2
1,092,078 - +2.1
1,092,333 + +0.1
1,092,496 - -0.3
1,092,499 + -0.7
1,092,499 + -1.0
1,092,500 - -0.2
1,092,500 - -1.3
1,092,998 - -0.3
1,093,147 + ABID97_RS05195 0.12 -1.1

Or see this region's nucleotide sequence