Experiment: L-Phenylalanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS04320 and ABID97_RS04325 are separated by 194 nucleotides ABID97_RS04325 and ABID97_RS04330 are separated by 128 nucleotides ABID97_RS04330 and ABID97_RS04335 are separated by 493 nucleotides
ABID97_RS04320: ABID97_RS04320 - ABC transporter substrate-binding protein, at 886,388 to 887,593
_RS04320
ABID97_RS04325: ABID97_RS04325 - F0F1 ATP synthase subunit C, at 887,788 to 888,027
_RS04325
ABID97_RS04330: ABID97_RS04330 - DMT family transporter, at 888,156 to 889,046
_RS04330
ABID97_RS04335: ABID97_RS04335 - sterol desaturase family protein, at 889,540 to 889,995
_RS04335
Position (kb) 888
889
890 Strain fitness (log2 ratio) -2
-1
0
1 at 887.211 kb on + strand, within ABID97_RS04320 at 887.211 kb on + strand, within ABID97_RS04320 at 887.712 kb on + strand at 887.712 kb on + strand at 887.715 kb on + strand at 887.715 kb on + strand at 887.716 kb on - strand at 888.063 kb on + strand at 888.063 kb on + strand at 888.064 kb on - strand at 888.064 kb on - strand at 888.127 kb on + strand at 888.343 kb on + strand, within ABID97_RS04330 at 888.343 kb on + strand, within ABID97_RS04330 at 888.589 kb on + strand, within ABID97_RS04330 at 888.740 kb on - strand, within ABID97_RS04330 at 889.264 kb on + strand at 889.265 kb on - strand at 889.291 kb on + strand at 889.291 kb on + strand at 889.292 kb on - strand at 889.292 kb on - strand at 889.436 kb on + strand at 889.436 kb on + strand at 889.436 kb on + strand at 889.592 kb on + strand, within ABID97_RS04335 at 889.592 kb on + strand, within ABID97_RS04335 at 889.593 kb on - strand, within ABID97_RS04335 at 889.593 kb on - strand, within ABID97_RS04335 at 889.593 kb on - strand, within ABID97_RS04335 at 889.627 kb on + strand, within ABID97_RS04335 at 889.627 kb on + strand, within ABID97_RS04335 at 889.628 kb on - strand, within ABID97_RS04335 at 889.628 kb on - strand, within ABID97_RS04335 at 889.688 kb on + strand, within ABID97_RS04335 at 889.688 kb on + strand, within ABID97_RS04335 at 889.688 kb on + strand, within ABID97_RS04335 at 889.689 kb on - strand, within ABID97_RS04335 at 889.702 kb on + strand, within ABID97_RS04335 at 889.703 kb on - strand, within ABID97_RS04335 at 889.723 kb on + strand, within ABID97_RS04335 at 889.723 kb on + strand, within ABID97_RS04335 at 889.724 kb on - strand, within ABID97_RS04335 at 889.724 kb on - strand, within ABID97_RS04335 at 889.724 kb on - strand, within ABID97_RS04335 at 889.738 kb on + strand, within ABID97_RS04335 at 889.787 kb on - strand, within ABID97_RS04335 at 889.787 kb on - strand, within ABID97_RS04335 at 889.816 kb on + strand, within ABID97_RS04335 at 889.817 kb on - strand, within ABID97_RS04335 at 889.862 kb on - strand, within ABID97_RS04335 at 889.958 kb on + strand at 889.959 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (C) remove 887,211 + ABID97_RS04320 0.68 -0.4 887,211 + ABID97_RS04320 0.68 +0.0 887,712 + +0.0 887,712 + +0.5 887,715 + -0.0 887,715 + -0.1 887,716 - -2.2 888,063 + -0.1 888,063 + -0.2 888,064 - +0.4 888,064 - +0.2 888,127 + +0.1 888,343 + ABID97_RS04330 0.21 +0.4 888,343 + ABID97_RS04330 0.21 +0.4 888,589 + ABID97_RS04330 0.49 +0.6 888,740 - ABID97_RS04330 0.66 -0.1 889,264 + -0.2 889,265 - -0.1 889,291 + +1.6 889,291 + +0.3 889,292 - -0.1 889,292 - -0.1 889,436 + -0.2 889,436 + -0.2 889,436 + +0.1 889,592 + ABID97_RS04335 0.11 +0.6 889,592 + ABID97_RS04335 0.11 -0.1 889,593 - ABID97_RS04335 0.12 +0.3 889,593 - ABID97_RS04335 0.12 +0.2 889,593 - ABID97_RS04335 0.12 -0.3 889,627 + ABID97_RS04335 0.19 -0.5 889,627 + ABID97_RS04335 0.19 -0.1 889,628 - ABID97_RS04335 0.19 -0.1 889,628 - ABID97_RS04335 0.19 -0.2 889,688 + ABID97_RS04335 0.32 -1.9 889,688 + ABID97_RS04335 0.32 -0.3 889,688 + ABID97_RS04335 0.32 -0.5 889,689 - ABID97_RS04335 0.33 +0.6 889,702 + ABID97_RS04335 0.36 -0.5 889,703 - ABID97_RS04335 0.36 -0.6 889,723 + ABID97_RS04335 0.40 -0.9 889,723 + ABID97_RS04335 0.40 -0.4 889,724 - ABID97_RS04335 0.40 -1.4 889,724 - ABID97_RS04335 0.40 +0.2 889,724 - ABID97_RS04335 0.40 +0.5 889,738 + ABID97_RS04335 0.43 -1.5 889,787 - ABID97_RS04335 0.54 +0.5 889,787 - ABID97_RS04335 0.54 +0.0 889,816 + ABID97_RS04335 0.61 +0.6 889,817 - ABID97_RS04335 0.61 -0.8 889,862 - ABID97_RS04335 0.71 +0.1 889,958 + +1.6 889,959 - -1.2
Or see this region's nucleotide sequence