Experiment: L-Phenylalanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS03960 and ABID97_RS03965 are separated by 30 nucleotides ABID97_RS03965 and ABID97_RS03970 are separated by 8 nucleotides ABID97_RS03970 and ABID97_RS03975 are separated by 57 nucleotides
ABID97_RS03960: ABID97_RS03960 - homogentisate 1,2-dioxygenase, at 812,402 to 813,727
_RS03960
ABID97_RS03965: ABID97_RS03965 - DUF2783 domain-containing protein, at 813,758 to 813,952
_RS03965
ABID97_RS03970: ABID97_RS03970 - FAD-dependent oxidoreductase, at 813,961 to 815,598
_RS03970
ABID97_RS03975: ABID97_RS03975 - MBL fold metallo-hydrolase, at 815,656 to 816,615
_RS03975
Position (kb) 813
814
815
816 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 812.979 kb on + strand, within ABID97_RS03960 at 812.979 kb on + strand, within ABID97_RS03960 at 812.979 kb on + strand, within ABID97_RS03960 at 812.980 kb on - strand, within ABID97_RS03960 at 813.090 kb on + strand, within ABID97_RS03960 at 813.090 kb on + strand, within ABID97_RS03960 at 813.312 kb on + strand, within ABID97_RS03960 at 813.490 kb on - strand, within ABID97_RS03960 at 813.694 kb on - strand at 813.759 kb on + strand at 813.759 kb on + strand at 813.759 kb on + strand at 813.760 kb on - strand at 813.760 kb on - strand at 813.760 kb on - strand at 813.840 kb on + strand, within ABID97_RS03965 at 813.841 kb on - strand, within ABID97_RS03965 at 814.058 kb on + strand at 814.083 kb on - strand at 814.538 kb on + strand, within ABID97_RS03970 at 814.538 kb on + strand, within ABID97_RS03970 at 814.539 kb on - strand, within ABID97_RS03970 at 814.539 kb on - strand, within ABID97_RS03970 at 814.728 kb on - strand, within ABID97_RS03970 at 815.088 kb on - strand, within ABID97_RS03970 at 815.088 kb on - strand, within ABID97_RS03970 at 815.219 kb on + strand, within ABID97_RS03970 at 815.220 kb on - strand, within ABID97_RS03970 at 815.220 kb on - strand, within ABID97_RS03970 at 815.220 kb on - strand, within ABID97_RS03970 at 815.222 kb on + strand, within ABID97_RS03970 at 815.222 kb on + strand, within ABID97_RS03970 at 815.222 kb on + strand, within ABID97_RS03970 at 815.222 kb on + strand, within ABID97_RS03970 at 815.222 kb on + strand, within ABID97_RS03970 at 815.223 kb on - strand, within ABID97_RS03970 at 815.223 kb on - strand, within ABID97_RS03970 at 815.285 kb on + strand, within ABID97_RS03970 at 815.567 kb on + strand at 815.567 kb on + strand at 815.568 kb on - strand at 815.589 kb on - strand at 815.738 kb on + strand at 815.793 kb on - strand, within ABID97_RS03975 at 815.826 kb on - strand, within ABID97_RS03975 at 815.876 kb on + strand, within ABID97_RS03975 at 815.877 kb on - strand, within ABID97_RS03975 at 816.020 kb on + strand, within ABID97_RS03975 at 816.020 kb on + strand, within ABID97_RS03975 at 816.339 kb on - strand, within ABID97_RS03975 at 816.390 kb on - strand, within ABID97_RS03975 at 816.390 kb on - strand, within ABID97_RS03975 at 816.525 kb on + strand at 816.525 kb on + strand at 816.526 kb on - strand at 816.526 kb on - strand at 816.527 kb on + strand at 816.527 kb on + strand at 816.527 kb on + strand at 816.528 kb on - strand at 816.528 kb on - strand at 816.528 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (C) remove 812,979 + ABID97_RS03960 0.44 -2.6 812,979 + ABID97_RS03960 0.44 -2.4 812,979 + ABID97_RS03960 0.44 -2.2 812,980 - ABID97_RS03960 0.44 -1.9 813,090 + ABID97_RS03960 0.52 -2.4 813,090 + ABID97_RS03960 0.52 -2.1 813,312 + ABID97_RS03960 0.69 -2.0 813,490 - ABID97_RS03960 0.82 -3.0 813,694 - -1.7 813,759 + -0.1 813,759 + -1.0 813,759 + -0.4 813,760 - +0.1 813,760 - -0.4 813,760 - -0.7 813,840 + ABID97_RS03965 0.42 -1.3 813,841 - ABID97_RS03965 0.43 -0.3 814,058 + -0.2 814,083 - -0.7 814,538 + ABID97_RS03970 0.35 -2.0 814,538 + ABID97_RS03970 0.35 -3.3 814,539 - ABID97_RS03970 0.35 -1.1 814,539 - ABID97_RS03970 0.35 -1.1 814,728 - ABID97_RS03970 0.47 -2.5 815,088 - ABID97_RS03970 0.69 -0.7 815,088 - ABID97_RS03970 0.69 -1.8 815,219 + ABID97_RS03970 0.77 -2.6 815,220 - ABID97_RS03970 0.77 -1.7 815,220 - ABID97_RS03970 0.77 -0.7 815,220 - ABID97_RS03970 0.77 +2.1 815,222 + ABID97_RS03970 0.77 -3.0 815,222 + ABID97_RS03970 0.77 -1.8 815,222 + ABID97_RS03970 0.77 -1.1 815,222 + ABID97_RS03970 0.77 -2.3 815,222 + ABID97_RS03970 0.77 -1.3 815,223 - ABID97_RS03970 0.77 -1.4 815,223 - ABID97_RS03970 0.77 -2.2 815,285 + ABID97_RS03970 0.81 +1.5 815,567 + -1.0 815,567 + -2.0 815,568 - -0.9 815,589 - -0.5 815,738 + -0.9 815,793 - ABID97_RS03975 0.14 +0.2 815,826 - ABID97_RS03975 0.18 -0.1 815,876 + ABID97_RS03975 0.23 -0.4 815,877 - ABID97_RS03975 0.23 +1.5 816,020 + ABID97_RS03975 0.38 -0.8 816,020 + ABID97_RS03975 0.38 -0.2 816,339 - ABID97_RS03975 0.71 -0.7 816,390 - ABID97_RS03975 0.76 -0.3 816,390 - ABID97_RS03975 0.76 -4.0 816,525 + -4.0 816,525 + -2.6 816,526 - -0.1 816,526 - -0.0 816,527 + -2.0 816,527 + -0.1 816,527 + -2.6 816,528 - -0.6 816,528 - -0.2 816,528 - -0.5
Or see this region's nucleotide sequence