Strain Fitness in Variovorax sp. OAS795 around ABID97_RS03125

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS03120 and ABID97_RS03125 are separated by 123 nucleotidesABID97_RS03125 and ABID97_RS03130 are separated by 10 nucleotidesABID97_RS03130 and ABID97_RS03135 are separated by 59 nucleotides ABID97_RS03120: ABID97_RS03120 - benzoyl-CoA 2,3-epoxidase subunit BoxB, at 632,801 to 634,228 _RS03120 ABID97_RS03125: ABID97_RS03125 - benzoyl-CoA 2,3-epoxidase subunit BoxA, at 634,352 to 635,638 _RS03125 ABID97_RS03130: ABID97_RS03130 - MaoC family dehydratase, at 635,649 to 636,104 _RS03130 ABID97_RS03135: ABID97_RS03135 - adhesin, at 636,164 to 636,685 _RS03135 Position (kb) 634 635 636Strain fitness (log2 ratio) -3 -2 -1 0 1at 633.428 kb on + strand, within ABID97_RS03120at 633.429 kb on - strand, within ABID97_RS03120at 633.680 kb on + strand, within ABID97_RS03120at 633.680 kb on + strand, within ABID97_RS03120at 633.680 kb on + strand, within ABID97_RS03120at 633.680 kb on + strand, within ABID97_RS03120at 633.737 kb on + strand, within ABID97_RS03120at 633.737 kb on + strand, within ABID97_RS03120at 633.737 kb on + strand, within ABID97_RS03120at 633.809 kb on + strand, within ABID97_RS03120at 633.809 kb on + strand, within ABID97_RS03120at 633.809 kb on + strand, within ABID97_RS03120at 633.809 kb on + strand, within ABID97_RS03120at 633.809 kb on + strand, within ABID97_RS03120at 633.810 kb on - strand, within ABID97_RS03120at 633.810 kb on - strand, within ABID97_RS03120at 633.810 kb on - strand, within ABID97_RS03120at 633.810 kb on - strand, within ABID97_RS03120at 634.211 kb on + strandat 634.211 kb on + strandat 634.212 kb on - strandat 634.212 kb on - strandat 634.234 kb on + strandat 634.234 kb on + strandat 634.234 kb on + strandat 634.234 kb on + strandat 634.235 kb on - strandat 634.475 kb on + strandat 634.475 kb on + strandat 634.475 kb on + strandat 634.475 kb on + strandat 634.475 kb on + strandat 634.475 kb on + strandat 634.476 kb on - strandat 634.476 kb on - strandat 634.476 kb on - strandat 634.476 kb on - strandat 634.577 kb on + strand, within ABID97_RS03125at 634.578 kb on - strand, within ABID97_RS03125at 634.578 kb on - strand, within ABID97_RS03125at 634.793 kb on + strand, within ABID97_RS03125at 634.793 kb on + strand, within ABID97_RS03125at 635.114 kb on + strand, within ABID97_RS03125at 635.114 kb on + strand, within ABID97_RS03125at 635.114 kb on + strand, within ABID97_RS03125at 635.115 kb on - strand, within ABID97_RS03125at 635.115 kb on - strand, within ABID97_RS03125at 635.345 kb on + strand, within ABID97_RS03125at 635.345 kb on + strand, within ABID97_RS03125at 635.346 kb on - strand, within ABID97_RS03125at 635.429 kb on + strand, within ABID97_RS03125at 635.429 kb on + strand, within ABID97_RS03125at 635.429 kb on + strand, within ABID97_RS03125at 635.501 kb on + strand, within ABID97_RS03125at 635.501 kb on + strand, within ABID97_RS03125at 635.501 kb on + strand, within ABID97_RS03125at 635.502 kb on - strand, within ABID97_RS03125at 635.633 kb on + strandat 635.633 kb on + strandat 635.633 kb on + strandat 635.634 kb on - strandat 635.634 kb on - strandat 635.636 kb on + strandat 635.636 kb on + strandat 635.636 kb on + strandat 635.636 kb on + strandat 635.637 kb on - strandat 635.637 kb on - strandat 635.637 kb on - strandat 635.697 kb on + strand, within ABID97_RS03130at 635.697 kb on + strand, within ABID97_RS03130at 635.697 kb on + strand, within ABID97_RS03130at 635.698 kb on - strand, within ABID97_RS03130at 635.698 kb on - strand, within ABID97_RS03130at 635.698 kb on - strand, within ABID97_RS03130at 635.739 kb on + strand, within ABID97_RS03130at 635.740 kb on - strand, within ABID97_RS03130at 636.165 kb on + strandat 636.166 kb on - strandat 636.166 kb on - strandat 636.166 kb on - strandat 636.166 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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633,428 + ABID97_RS03120 0.44 -0.4
633,429 - ABID97_RS03120 0.44 -0.0
633,680 + ABID97_RS03120 0.62 -0.4
633,680 + ABID97_RS03120 0.62 -1.1
633,680 + ABID97_RS03120 0.62 +0.3
633,680 + ABID97_RS03120 0.62 -0.2
633,737 + ABID97_RS03120 0.66 -0.2
633,737 + ABID97_RS03120 0.66 +0.3
633,737 + ABID97_RS03120 0.66 -0.6
633,809 + ABID97_RS03120 0.71 -0.0
633,809 + ABID97_RS03120 0.71 -0.5
633,809 + ABID97_RS03120 0.71 -0.3
633,809 + ABID97_RS03120 0.71 -0.4
633,809 + ABID97_RS03120 0.71 -0.4
633,810 - ABID97_RS03120 0.71 -0.8
633,810 - ABID97_RS03120 0.71 -0.8
633,810 - ABID97_RS03120 0.71 -0.2
633,810 - ABID97_RS03120 0.71 -2.1
634,211 + -0.8
634,211 + -0.6
634,212 - -0.5
634,212 - -0.5
634,234 + -0.2
634,234 + -0.3
634,234 + -1.8
634,234 + +0.0
634,235 - -0.4
634,475 + -3.2
634,475 + -0.9
634,475 + -3.5
634,475 + -2.0
634,475 + -1.7
634,475 + -2.2
634,476 - -1.8
634,476 - -2.1
634,476 - -3.5
634,476 - -1.9
634,577 + ABID97_RS03125 0.17 -1.4
634,578 - ABID97_RS03125 0.18 -0.9
634,578 - ABID97_RS03125 0.18 -2.0
634,793 + ABID97_RS03125 0.34 -1.3
634,793 + ABID97_RS03125 0.34 -3.3
635,114 + ABID97_RS03125 0.59 -2.3
635,114 + ABID97_RS03125 0.59 -3.3
635,114 + ABID97_RS03125 0.59 -1.3
635,115 - ABID97_RS03125 0.59 -0.7
635,115 - ABID97_RS03125 0.59 -1.7
635,345 + ABID97_RS03125 0.77 -2.2
635,345 + ABID97_RS03125 0.77 +0.1
635,346 - ABID97_RS03125 0.77 -0.9
635,429 + ABID97_RS03125 0.84 -2.7
635,429 + ABID97_RS03125 0.84 -2.1
635,429 + ABID97_RS03125 0.84 -3.6
635,501 + ABID97_RS03125 0.89 -3.2
635,501 + ABID97_RS03125 0.89 -1.3
635,501 + ABID97_RS03125 0.89 -1.6
635,502 - ABID97_RS03125 0.89 -0.9
635,633 + -0.5
635,633 + -1.0
635,633 + +0.9
635,634 - +0.9
635,634 - -0.3
635,636 + -0.3
635,636 + -0.5
635,636 + +1.1
635,636 + -0.2
635,637 - +1.4
635,637 - +0.2
635,637 - -0.5
635,697 + ABID97_RS03130 0.11 +0.0
635,697 + ABID97_RS03130 0.11 -0.7
635,697 + ABID97_RS03130 0.11 +0.8
635,698 - ABID97_RS03130 0.11 -0.5
635,698 - ABID97_RS03130 0.11 +1.0
635,698 - ABID97_RS03130 0.11 -0.2
635,739 + ABID97_RS03130 0.20 -0.1
635,740 - ABID97_RS03130 0.20 -2.7
636,165 + +0.6
636,166 - +0.1
636,166 - -0.6
636,166 - +1.5
636,166 - -0.6

Or see this region's nucleotide sequence