Experiment: L-Phenylalanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS00100 and ABID97_RS00105 are separated by 18 nucleotides ABID97_RS00105 and ABID97_RS00110 are separated by 119 nucleotides ABID97_RS00110 and ABID97_RS00115 are separated by 65 nucleotides
ABID97_RS00100: ABID97_RS00100 - formyltetrahydrofolate deformylase, at 21,668 to 22,525
_RS00100
ABID97_RS00105: ABID97_RS00105 - YXWGXW repeat-containing protein, at 22,544 to 22,921
_RS00105
ABID97_RS00110: ABID97_RS00110 - SGNH/GDSL hydrolase family protein, at 23,041 to 24,363
_RS00110
ABID97_RS00115: ABID97_RS00115 - carboxyl transferase domain-containing protein, at 24,429 to 27,734
_RS00115
Position (kb) 23
24
25 Strain fitness (log2 ratio) -2
-1
0
1 at 22.070 kb on + strand, within ABID97_RS00100 at 22.070 kb on + strand, within ABID97_RS00100 at 22.669 kb on - strand, within ABID97_RS00105 at 22.669 kb on - strand, within ABID97_RS00105 at 22.669 kb on - strand, within ABID97_RS00105 at 22.674 kb on + strand, within ABID97_RS00105 at 22.675 kb on - strand, within ABID97_RS00105 at 22.675 kb on - strand, within ABID97_RS00105 at 22.695 kb on + strand, within ABID97_RS00105 at 22.695 kb on + strand, within ABID97_RS00105 at 22.695 kb on + strand, within ABID97_RS00105 at 22.695 kb on + strand, within ABID97_RS00105 at 22.695 kb on + strand, within ABID97_RS00105 at 22.695 kb on + strand, within ABID97_RS00105 at 22.695 kb on + strand, within ABID97_RS00105 at 22.695 kb on + strand, within ABID97_RS00105 at 22.695 kb on + strand, within ABID97_RS00105 at 22.695 kb on + strand, within ABID97_RS00105 at 22.695 kb on + strand, within ABID97_RS00105 at 22.695 kb on + strand, within ABID97_RS00105 at 22.696 kb on - strand, within ABID97_RS00105 at 22.696 kb on - strand, within ABID97_RS00105 at 22.696 kb on - strand, within ABID97_RS00105 at 22.696 kb on - strand, within ABID97_RS00105 at 22.696 kb on - strand, within ABID97_RS00105 at 22.696 kb on - strand, within ABID97_RS00105 at 22.696 kb on - strand, within ABID97_RS00105 at 22.696 kb on - strand, within ABID97_RS00105 at 22.696 kb on - strand, within ABID97_RS00105 at 22.696 kb on - strand, within ABID97_RS00105 at 22.696 kb on - strand, within ABID97_RS00105 at 22.696 kb on - strand, within ABID97_RS00105 at 22.696 kb on - strand, within ABID97_RS00105 at 22.696 kb on - strand, within ABID97_RS00105 at 22.696 kb on - strand, within ABID97_RS00105 at 22.696 kb on - strand, within ABID97_RS00105 at 22.737 kb on + strand, within ABID97_RS00105 at 22.738 kb on - strand, within ABID97_RS00105 at 22.738 kb on - strand, within ABID97_RS00105 at 22.759 kb on - strand, within ABID97_RS00105 at 22.981 kb on + strand at 22.990 kb on - strand at 22.990 kb on - strand at 23.004 kb on + strand at 23.004 kb on + strand at 23.126 kb on + strand at 23.126 kb on + strand at 23.127 kb on - strand at 23.608 kb on + strand, within ABID97_RS00110 at 24.384 kb on + strand at 24.385 kb on - strand at 24.419 kb on + strand at 24.420 kb on - strand at 24.441 kb on + strand at 24.441 kb on + strand at 24.442 kb on - strand at 24.442 kb on - strand at 24.442 kb on - strand at 24.445 kb on + strand at 24.445 kb on + strand at 24.445 kb on + strand at 24.446 kb on - strand at 24.446 kb on - strand at 24.770 kb on - strand, within ABID97_RS00115 at 25.133 kb on - strand, within ABID97_RS00115 at 25.216 kb on + strand, within ABID97_RS00115 at 25.217 kb on - strand, within ABID97_RS00115 at 25.225 kb on + strand, within ABID97_RS00115 at 25.226 kb on - strand, within ABID97_RS00115 at 25.226 kb on - strand, within ABID97_RS00115
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (C) remove 22,070 + ABID97_RS00100 0.47 +0.1 22,070 + ABID97_RS00100 0.47 -0.5 22,669 - ABID97_RS00105 0.33 +0.1 22,669 - ABID97_RS00105 0.33 +0.8 22,669 - ABID97_RS00105 0.33 +0.3 22,674 + ABID97_RS00105 0.34 +0.6 22,675 - ABID97_RS00105 0.35 +0.6 22,675 - ABID97_RS00105 0.35 -0.9 22,695 + ABID97_RS00105 0.40 -0.4 22,695 + ABID97_RS00105 0.40 +0.5 22,695 + ABID97_RS00105 0.40 +0.4 22,695 + ABID97_RS00105 0.40 +0.6 22,695 + ABID97_RS00105 0.40 -0.6 22,695 + ABID97_RS00105 0.40 -0.6 22,695 + ABID97_RS00105 0.40 -0.2 22,695 + ABID97_RS00105 0.40 +0.8 22,695 + ABID97_RS00105 0.40 -0.0 22,695 + ABID97_RS00105 0.40 -0.2 22,695 + ABID97_RS00105 0.40 +0.3 22,695 + ABID97_RS00105 0.40 +1.2 22,696 - ABID97_RS00105 0.40 -0.1 22,696 - ABID97_RS00105 0.40 -0.6 22,696 - ABID97_RS00105 0.40 +0.1 22,696 - ABID97_RS00105 0.40 +1.6 22,696 - ABID97_RS00105 0.40 +0.1 22,696 - ABID97_RS00105 0.40 +0.3 22,696 - ABID97_RS00105 0.40 +0.2 22,696 - ABID97_RS00105 0.40 +0.0 22,696 - ABID97_RS00105 0.40 -0.4 22,696 - ABID97_RS00105 0.40 +0.9 22,696 - ABID97_RS00105 0.40 +0.2 22,696 - ABID97_RS00105 0.40 +0.3 22,696 - ABID97_RS00105 0.40 -0.3 22,696 - ABID97_RS00105 0.40 +0.2 22,696 - ABID97_RS00105 0.40 +0.2 22,696 - ABID97_RS00105 0.40 -0.0 22,737 + ABID97_RS00105 0.51 -0.5 22,738 - ABID97_RS00105 0.51 -0.2 22,738 - ABID97_RS00105 0.51 -0.2 22,759 - ABID97_RS00105 0.57 +0.2 22,981 + -0.5 22,990 - +0.2 22,990 - +0.9 23,004 + -0.2 23,004 + -0.1 23,126 + -0.6 23,126 + -0.2 23,127 - +0.9 23,608 + ABID97_RS00110 0.43 -1.8 24,384 + -1.2 24,385 - +0.7 24,419 + -0.2 24,420 - -0.3 24,441 + +0.4 24,441 + +0.1 24,442 - +0.5 24,442 - -0.2 24,442 - +0.1 24,445 + +0.4 24,445 + +1.1 24,445 + -0.1 24,446 - -1.2 24,446 - +1.5 24,770 - ABID97_RS00115 0.10 -0.7 25,133 - ABID97_RS00115 0.21 +0.1 25,216 + ABID97_RS00115 0.24 +0.6 25,217 - ABID97_RS00115 0.24 +0.1 25,225 + ABID97_RS00115 0.24 -0.1 25,226 - ABID97_RS00115 0.24 -0.4 25,226 - ABID97_RS00115 0.24 +0.6
Or see this region's nucleotide sequence