Experiment: D-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt leuB and leuA overlap by 1 nucleotides leuA and leuL are separated by 92 nucleotides leuL and leuO are separated by 659 nucleotides
b0073: leuB - 3-isopropylmalate dehydrogenase (VIMSS), at 80,867 to 81,958
leuB
b0074: leuA - 2-isopropylmalate synthase (NCBI), at 81,958 to 83,529
leuA
b0075: leuL - leu operon leader peptide (NCBI), at 83,622 to 83,708
leuL
b0076: leuO - probable transcriptional activator for leuABCD operon (VIMSS), at 84,368 to 85,312
leuO
Position (kb)
81
82
83
84 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 80.965 kb on + strand at 80.973 kb on - strand at 80.986 kb on - strand, within leuB at 81.032 kb on - strand, within leuB at 81.037 kb on + strand, within leuB at 81.114 kb on + strand, within leuB at 81.114 kb on + strand, within leuB at 81.122 kb on - strand, within leuB at 81.191 kb on - strand, within leuB at 81.191 kb on - strand, within leuB at 81.224 kb on + strand, within leuB at 81.284 kb on + strand, within leuB at 81.284 kb on + strand, within leuB at 81.287 kb on + strand, within leuB at 81.290 kb on - strand, within leuB at 81.292 kb on - strand, within leuB at 81.292 kb on - strand, within leuB at 81.314 kb on - strand, within leuB at 81.404 kb on + strand, within leuB at 81.409 kb on - strand, within leuB at 81.457 kb on + strand, within leuB at 81.480 kb on + strand, within leuB at 81.554 kb on - strand, within leuB at 81.580 kb on + strand, within leuB at 81.607 kb on - strand, within leuB at 81.692 kb on + strand, within leuB at 81.692 kb on + strand, within leuB at 81.910 kb on + strand at 81.910 kb on + strand at 81.922 kb on - strand at 82.051 kb on + strand at 82.135 kb on + strand, within leuA at 82.243 kb on + strand, within leuA at 82.243 kb on + strand, within leuA at 82.246 kb on - strand, within leuA at 82.425 kb on + strand, within leuA at 82.462 kb on - strand, within leuA at 82.462 kb on - strand, within leuA at 82.502 kb on - strand, within leuA at 82.506 kb on - strand, within leuA at 82.624 kb on + strand, within leuA at 82.632 kb on - strand, within leuA at 82.635 kb on + strand, within leuA at 82.637 kb on + strand, within leuA at 82.638 kb on - strand, within leuA at 82.638 kb on - strand, within leuA at 82.647 kb on + strand, within leuA at 82.671 kb on - strand, within leuA at 82.671 kb on - strand, within leuA at 82.671 kb on - strand, within leuA at 82.713 kb on + strand, within leuA at 82.860 kb on + strand, within leuA at 82.860 kb on + strand, within leuA at 82.870 kb on + strand, within leuA at 82.878 kb on - strand, within leuA at 82.963 kb on + strand, within leuA at 83.006 kb on + strand, within leuA at 83.006 kb on + strand, within leuA at 83.006 kb on + strand, within leuA at 83.006 kb on + strand, within leuA at 83.006 kb on + strand, within leuA at 83.190 kb on - strand, within leuA at 83.360 kb on - strand, within leuA at 83.360 kb on - strand, within leuA at 83.465 kb on - strand at 83.465 kb on - strand at 83.470 kb on + strand at 83.486 kb on - strand at 83.525 kb on + strand at 83.525 kb on - strand at 83.547 kb on + strand at 83.557 kb on + strand at 83.561 kb on + strand at 83.610 kb on + strand at 83.619 kb on + strand at 83.620 kb on + strand at 83.620 kb on + strand at 83.620 kb on + strand at 83.622 kb on - strand at 83.625 kb on + strand at 83.627 kb on - strand at 83.627 kb on - strand at 83.627 kb on - strand at 83.627 kb on - strand at 83.635 kb on - strand, within leuL at 83.640 kb on + strand, within leuL at 83.640 kb on + strand, within leuL at 83.642 kb on + strand, within leuL at 83.642 kb on + strand, within leuL at 83.643 kb on - strand, within leuL at 83.643 kb on - strand, within leuL at 83.644 kb on + strand, within leuL at 83.645 kb on - strand, within leuL at 83.650 kb on - strand, within leuL at 83.650 kb on - strand, within leuL at 83.650 kb on - strand, within leuL at 83.650 kb on - strand, within leuL at 83.660 kb on - strand, within leuL at 83.660 kb on - strand, within leuL at 83.675 kb on + strand, within leuL at 83.675 kb on + strand, within leuL at 83.675 kb on + strand, within leuL at 83.675 kb on + strand, within leuL at 83.675 kb on + strand, within leuL at 83.675 kb on + strand, within leuL at 83.676 kb on - strand, within leuL at 83.683 kb on - strand, within leuL at 83.683 kb on - strand, within leuL at 83.683 kb on - strand, within leuL at 83.683 kb on - strand, within leuL at 83.683 kb on - strand, within leuL at 83.683 kb on - strand, within leuL at 83.683 kb on - strand, within leuL at 83.691 kb on - strand, within leuL at 83.691 kb on - strand, within leuL at 83.704 kb on - strand at 83.706 kb on - strand at 83.717 kb on + strand at 83.730 kb on + strand at 83.730 kb on + strand at 83.730 kb on - strand at 83.745 kb on - strand at 83.772 kb on + strand at 83.772 kb on + strand at 83.774 kb on - strand at 83.774 kb on - strand at 83.832 kb on + strand at 83.832 kb on + strand at 83.897 kb on + strand at 83.920 kb on + strand at 83.950 kb on + strand at 83.959 kb on + strand at 83.959 kb on + strand at 83.959 kb on + strand at 83.959 kb on + strand at 83.959 kb on + strand at 83.959 kb on + strand at 84.187 kb on + strand at 84.199 kb on + strand at 84.199 kb on + strand at 84.348 kb on + strand at 84.354 kb on - strand at 84.354 kb on - strand at 84.362 kb on - strand at 84.364 kb on - strand at 84.364 kb on - strand at 84.367 kb on - strand at 84.369 kb on - strand at 84.370 kb on + strand at 84.380 kb on + strand at 84.384 kb on - strand at 84.384 kb on - strand at 84.384 kb on - strand at 84.384 kb on - strand at 84.384 kb on - strand at 84.393 kb on - strand at 84.398 kb on - strand at 84.412 kb on - strand at 84.414 kb on + strand at 84.414 kb on + strand at 84.414 kb on + strand at 84.414 kb on + strand at 84.414 kb on - strand at 84.414 kb on - strand at 84.419 kb on + strand at 84.422 kb on - strand at 84.424 kb on + strand at 84.424 kb on + strand at 84.425 kb on + strand at 84.429 kb on - strand at 84.429 kb on - strand at 84.432 kb on - strand at 84.432 kb on - strand at 84.432 kb on - strand at 84.433 kb on - strand at 84.442 kb on - strand at 84.443 kb on - strand at 84.443 kb on - strand at 84.469 kb on - strand, within leuO at 84.480 kb on + strand, within leuO at 84.480 kb on + strand, within leuO at 84.480 kb on + strand, within leuO at 84.480 kb on + strand, within leuO at 84.484 kb on + strand, within leuO at 84.484 kb on + strand, within leuO at 84.486 kb on - strand, within leuO at 84.486 kb on - strand, within leuO at 84.488 kb on - strand, within leuO at 84.488 kb on - strand, within leuO at 84.488 kb on - strand, within leuO at 84.508 kb on - strand, within leuO at 84.515 kb on - strand, within leuO at 84.515 kb on - strand, within leuO
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (N) remove 80,965 + -2.5 80,973 - -3.4 80,986 - leuB b0073 0.11 -4.6 81,032 - leuB b0073 0.15 -2.7 81,037 + leuB b0073 0.16 -3.3 81,114 + leuB b0073 0.23 -1.7 81,114 + leuB b0073 0.23 -2.4 81,122 - leuB b0073 0.23 -3.2 81,191 - leuB b0073 0.30 -3.1 81,191 - leuB b0073 0.30 -2.0 81,224 + leuB b0073 0.33 -4.1 81,284 + leuB b0073 0.38 -2.4 81,284 + leuB b0073 0.38 -2.2 81,287 + leuB b0073 0.38 -2.0 81,290 - leuB b0073 0.39 -3.4 81,292 - leuB b0073 0.39 -3.6 81,292 - leuB b0073 0.39 -4.1 81,314 - leuB b0073 0.41 -3.0 81,404 + leuB b0073 0.49 -3.2 81,409 - leuB b0073 0.50 -1.7 81,457 + leuB b0073 0.54 -3.6 81,480 + leuB b0073 0.56 -3.3 81,554 - leuB b0073 0.63 -3.8 81,580 + leuB b0073 0.65 -4.0 81,607 - leuB b0073 0.68 -2.2 81,692 + leuB b0073 0.76 -2.6 81,692 + leuB b0073 0.76 -4.9 81,910 + -2.8 81,910 + -2.4 81,922 - -4.5 82,051 + -1.7 82,135 + leuA b0074 0.11 -2.3 82,243 + leuA b0074 0.18 -1.3 82,243 + leuA b0074 0.18 -1.3 82,246 - leuA b0074 0.18 -1.1 82,425 + leuA b0074 0.30 -2.4 82,462 - leuA b0074 0.32 -1.7 82,462 - leuA b0074 0.32 -1.1 82,502 - leuA b0074 0.35 -4.0 82,506 - leuA b0074 0.35 -1.9 82,624 + leuA b0074 0.42 -3.8 82,632 - leuA b0074 0.43 -4.0 82,635 + leuA b0074 0.43 -4.0 82,637 + leuA b0074 0.43 -3.3 82,638 - leuA b0074 0.43 -3.8 82,638 - leuA b0074 0.43 -2.0 82,647 + leuA b0074 0.44 -2.7 82,671 - leuA b0074 0.45 -3.1 82,671 - leuA b0074 0.45 -4.4 82,671 - leuA b0074 0.45 -2.4 82,713 + leuA b0074 0.48 -3.4 82,860 + leuA b0074 0.57 -0.9 82,860 + leuA b0074 0.57 -0.7 82,870 + leuA b0074 0.58 -3.8 82,878 - leuA b0074 0.59 -1.1 82,963 + leuA b0074 0.64 -3.6 83,006 + leuA b0074 0.67 -2.6 83,006 + leuA b0074 0.67 -3.3 83,006 + leuA b0074 0.67 -3.5 83,006 + leuA b0074 0.67 -2.1 83,006 + leuA b0074 0.67 -2.6 83,190 - leuA b0074 0.78 -4.0 83,360 - leuA b0074 0.89 -3.3 83,360 - leuA b0074 0.89 -3.2 83,465 - -1.7 83,465 - -3.0 83,470 + -4.1 83,486 - -3.1 83,525 + -2.6 83,525 - -2.6 83,547 + -2.8 83,557 + -2.7 83,561 + -4.7 83,610 + -4.0 83,619 + -4.2 83,620 + -1.6 83,620 + -2.8 83,620 + -1.7 83,622 - -3.8 83,625 + -1.9 83,627 - -3.8 83,627 - -3.9 83,627 - -2.2 83,627 - -3.8 83,635 - leuL b0075 0.15 -2.1 83,640 + leuL b0075 0.21 -2.4 83,640 + leuL b0075 0.21 -2.0 83,642 + leuL b0075 0.23 -2.2 83,642 + leuL b0075 0.23 -3.4 83,643 - leuL b0075 0.24 -2.7 83,643 - leuL b0075 0.24 -3.3 83,644 + leuL b0075 0.25 -3.2 83,645 - leuL b0075 0.26 -3.6 83,650 - leuL b0075 0.32 -3.4 83,650 - leuL b0075 0.32 -4.2 83,650 - leuL b0075 0.32 -4.1 83,650 - leuL b0075 0.32 -3.4 83,660 - leuL b0075 0.44 -1.3 83,660 - leuL b0075 0.44 +1.4 83,675 + leuL b0075 0.61 -3.3 83,675 + leuL b0075 0.61 -2.3 83,675 + leuL b0075 0.61 -2.3 83,675 + leuL b0075 0.61 -3.4 83,675 + leuL b0075 0.61 -2.4 83,675 + leuL b0075 0.61 -3.2 83,676 - leuL b0075 0.62 -0.4 83,683 - leuL b0075 0.70 +1.2 83,683 - leuL b0075 0.70 -0.0 83,683 - leuL b0075 0.70 -0.9 83,683 - leuL b0075 0.70 +0.0 83,683 - leuL b0075 0.70 -0.2 83,683 - leuL b0075 0.70 +1.1 83,683 - leuL b0075 0.70 -0.1 83,691 - leuL b0075 0.79 +0.2 83,691 - leuL b0075 0.79 -0.7 83,704 - +0.9 83,706 - -1.1 83,717 + -2.9 83,730 + -1.1 83,730 + -3.2 83,730 - -0.6 83,745 - -0.9 83,772 + -0.5 83,772 + -0.8 83,774 - +0.4 83,774 - +0.2 83,832 + -1.0 83,832 + +0.7 83,897 + -0.2 83,920 + +0.2 83,950 + -0.4 83,959 + -0.2 83,959 + -0.0 83,959 + +0.1 83,959 + -0.4 83,959 + -0.7 83,959 + +0.0 84,187 + -1.8 84,199 + -0.4 84,199 + -0.2 84,348 + -0.7 84,354 - -0.2 84,354 - +0.1 84,362 - +0.1 84,364 - -0.1 84,364 - -0.2 84,367 - -0.2 84,369 - -0.2 84,370 + -2.5 84,380 + -0.7 84,384 - +0.0 84,384 - +0.7 84,384 - +0.1 84,384 - -1.2 84,384 - +0.6 84,393 - -0.6 84,398 - -0.4 84,412 - -0.9 84,414 + -0.2 84,414 + -0.9 84,414 + +0.4 84,414 + -2.2 84,414 - -0.9 84,414 - +0.2 84,419 + -1.6 84,422 - -0.4 84,424 + +0.8 84,424 + +0.7 84,425 + -0.6 84,429 - -0.9 84,429 - -0.8 84,432 - +0.1 84,432 - -0.7 84,432 - -1.0 84,433 - -1.0 84,442 - +0.8 84,443 - +0.2 84,443 - +1.1 84,469 - leuO b0076 0.11 -0.2 84,480 + leuO b0076 0.12 -0.3 84,480 + leuO b0076 0.12 +0.2 84,480 + leuO b0076 0.12 -0.6 84,480 + leuO b0076 0.12 +0.2 84,484 + leuO b0076 0.12 -0.1 84,484 + leuO b0076 0.12 -0.1 84,486 - leuO b0076 0.12 +0.1 84,486 - leuO b0076 0.12 -0.3 84,488 - leuO b0076 0.13 +0.2 84,488 - leuO b0076 0.13 -0.1 84,488 - leuO b0076 0.13 -0.8 84,508 - leuO b0076 0.15 +0.3 84,515 - leuO b0076 0.16 -0.4 84,515 - leuO b0076 0.16 -0.8
Or see this region's nucleotide sequence