Strain Fitness in Serratia liquefaciens MT49 around IAI46_25230

Experiment: Cobalt chloride 60 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_25225 and IAI46_25230 are separated by 96 nucleotidesIAI46_25230 and IAI46_25235 are separated by 179 nucleotides IAI46_25225: IAI46_25225 - hypothetical protein, at 5,385,893 to 5,386,942 _25225 IAI46_25230: IAI46_25230 - NAD(P)H-dependent oxidoreductase, at 5,387,039 to 5,387,605 _25230 IAI46_25235: IAI46_25235 - 4'-phosphopantetheinyl transferase superfamily protein, at 5,387,785 to 5,388,510 _25235 Position (kb) 5387 5388Strain fitness (log2 ratio) -1 0 1 2at 5386.080 kb on + strand, within IAI46_25225at 5386.081 kb on - strand, within IAI46_25225at 5386.081 kb on - strand, within IAI46_25225at 5386.083 kb on + strand, within IAI46_25225at 5386.084 kb on - strand, within IAI46_25225at 5386.084 kb on - strand, within IAI46_25225at 5386.103 kb on - strand, within IAI46_25225at 5386.170 kb on + strand, within IAI46_25225at 5386.170 kb on + strand, within IAI46_25225at 5386.170 kb on + strand, within IAI46_25225at 5386.171 kb on - strand, within IAI46_25225at 5386.171 kb on - strand, within IAI46_25225at 5386.172 kb on + strand, within IAI46_25225at 5386.172 kb on + strand, within IAI46_25225at 5386.172 kb on + strand, within IAI46_25225at 5386.172 kb on + strand, within IAI46_25225at 5386.172 kb on + strand, within IAI46_25225at 5386.172 kb on + strand, within IAI46_25225at 5386.172 kb on + strand, within IAI46_25225at 5386.173 kb on - strand, within IAI46_25225at 5386.173 kb on - strand, within IAI46_25225at 5386.173 kb on - strand, within IAI46_25225at 5386.173 kb on - strand, within IAI46_25225at 5386.173 kb on - strand, within IAI46_25225at 5386.173 kb on - strand, within IAI46_25225at 5386.173 kb on - strand, within IAI46_25225at 5386.183 kb on - strand, within IAI46_25225at 5386.236 kb on + strand, within IAI46_25225at 5386.237 kb on - strand, within IAI46_25225at 5386.259 kb on + strand, within IAI46_25225at 5386.317 kb on + strand, within IAI46_25225at 5386.318 kb on - strand, within IAI46_25225at 5386.318 kb on - strand, within IAI46_25225at 5386.374 kb on + strand, within IAI46_25225at 5386.374 kb on + strand, within IAI46_25225at 5386.374 kb on + strand, within IAI46_25225at 5386.375 kb on - strand, within IAI46_25225at 5386.375 kb on - strand, within IAI46_25225at 5386.394 kb on - strand, within IAI46_25225at 5386.437 kb on + strand, within IAI46_25225at 5386.438 kb on - strand, within IAI46_25225at 5386.441 kb on + strand, within IAI46_25225at 5386.441 kb on + strand, within IAI46_25225at 5386.441 kb on + strand, within IAI46_25225at 5386.441 kb on + strand, within IAI46_25225at 5386.441 kb on + strand, within IAI46_25225at 5386.442 kb on - strand, within IAI46_25225at 5386.449 kb on + strand, within IAI46_25225at 5386.449 kb on + strand, within IAI46_25225at 5386.449 kb on + strand, within IAI46_25225at 5386.450 kb on - strand, within IAI46_25225at 5386.450 kb on - strand, within IAI46_25225at 5386.501 kb on - strand, within IAI46_25225at 5386.501 kb on - strand, within IAI46_25225at 5386.501 kb on - strand, within IAI46_25225at 5386.518 kb on + strand, within IAI46_25225at 5386.572 kb on + strand, within IAI46_25225at 5386.572 kb on + strand, within IAI46_25225at 5386.573 kb on - strand, within IAI46_25225at 5386.573 kb on - strand, within IAI46_25225at 5386.573 kb on - strand, within IAI46_25225at 5386.573 kb on - strand, within IAI46_25225at 5386.595 kb on - strand, within IAI46_25225at 5386.623 kb on + strand, within IAI46_25225at 5386.623 kb on + strand, within IAI46_25225at 5386.623 kb on + strand, within IAI46_25225at 5386.623 kb on + strand, within IAI46_25225at 5386.623 kb on + strand, within IAI46_25225at 5386.623 kb on + strand, within IAI46_25225at 5386.624 kb on - strand, within IAI46_25225at 5386.624 kb on - strand, within IAI46_25225at 5386.624 kb on - strand, within IAI46_25225at 5386.624 kb on - strand, within IAI46_25225at 5386.624 kb on - strand, within IAI46_25225at 5386.624 kb on - strand, within IAI46_25225at 5386.624 kb on - strand, within IAI46_25225at 5386.626 kb on + strand, within IAI46_25225at 5386.626 kb on + strand, within IAI46_25225at 5386.626 kb on + strand, within IAI46_25225at 5386.626 kb on + strand, within IAI46_25225at 5386.626 kb on + strand, within IAI46_25225at 5386.627 kb on - strand, within IAI46_25225at 5386.627 kb on - strand, within IAI46_25225at 5386.627 kb on - strand, within IAI46_25225at 5386.627 kb on - strand, within IAI46_25225at 5386.629 kb on + strand, within IAI46_25225at 5386.629 kb on + strand, within IAI46_25225at 5386.629 kb on + strand, within IAI46_25225at 5386.727 kb on + strand, within IAI46_25225at 5386.727 kb on + strand, within IAI46_25225at 5386.727 kb on + strand, within IAI46_25225at 5386.728 kb on - strand, within IAI46_25225at 5386.728 kb on - strand, within IAI46_25225at 5386.728 kb on - strand, within IAI46_25225at 5386.762 kb on - strand, within IAI46_25225at 5386.834 kb on + strand, within IAI46_25225at 5386.834 kb on + strand, within IAI46_25225at 5386.835 kb on - strand, within IAI46_25225at 5386.835 kb on - strand, within IAI46_25225at 5386.838 kb on + strandat 5386.839 kb on - strandat 5386.893 kb on - strandat 5386.916 kb on + strandat 5386.920 kb on - strandat 5386.962 kb on + strandat 5387.058 kb on + strandat 5387.141 kb on - strand, within IAI46_25230at 5387.252 kb on - strand, within IAI46_25230at 5387.252 kb on - strand, within IAI46_25230at 5387.252 kb on - strand, within IAI46_25230at 5387.252 kb on - strand, within IAI46_25230at 5387.349 kb on + strand, within IAI46_25230at 5387.350 kb on - strand, within IAI46_25230at 5387.350 kb on - strand, within IAI46_25230at 5387.350 kb on - strand, within IAI46_25230at 5387.350 kb on - strand, within IAI46_25230at 5387.354 kb on - strand, within IAI46_25230at 5387.354 kb on - strand, within IAI46_25230at 5387.354 kb on - strand, within IAI46_25230at 5387.355 kb on + strand, within IAI46_25230at 5387.355 kb on + strand, within IAI46_25230at 5387.457 kb on + strand, within IAI46_25230at 5387.457 kb on + strand, within IAI46_25230at 5387.458 kb on - strand, within IAI46_25230at 5387.458 kb on - strand, within IAI46_25230at 5387.458 kb on - strand, within IAI46_25230at 5387.589 kb on - strandat 5387.640 kb on + strandat 5387.640 kb on + strandat 5387.640 kb on + strandat 5387.641 kb on - strandat 5387.641 kb on - strandat 5387.655 kb on + strandat 5387.655 kb on + strandat 5387.655 kb on + strandat 5387.655 kb on + strandat 5387.655 kb on + strandat 5387.655 kb on + strandat 5387.656 kb on - strandat 5387.656 kb on - strandat 5387.681 kb on + strandat 5387.697 kb on - strandat 5387.701 kb on - strandat 5387.731 kb on - strandat 5387.749 kb on + strandat 5387.749 kb on + strandat 5387.877 kb on + strand, within IAI46_25235at 5387.888 kb on + strand, within IAI46_25235at 5387.888 kb on + strand, within IAI46_25235at 5387.888 kb on + strand, within IAI46_25235at 5387.888 kb on + strand, within IAI46_25235at 5387.900 kb on - strand, within IAI46_25235at 5387.900 kb on - strand, within IAI46_25235at 5387.900 kb on - strand, within IAI46_25235at 5387.945 kb on + strand, within IAI46_25235at 5388.042 kb on + strand, within IAI46_25235at 5388.172 kb on - strand, within IAI46_25235at 5388.245 kb on - strand, within IAI46_25235at 5388.261 kb on - strand, within IAI46_25235at 5388.313 kb on - strand, within IAI46_25235at 5388.356 kb on + strand, within IAI46_25235at 5388.356 kb on + strand, within IAI46_25235at 5388.356 kb on + strand, within IAI46_25235at 5388.356 kb on + strand, within IAI46_25235at 5388.511 kb on + strandat 5388.523 kb on - strandat 5388.523 kb on - strandat 5388.554 kb on + strandat 5388.554 kb on + strandat 5388.560 kb on - strandat 5388.595 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 60 uM, anaerobic
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5,386,080 + IAI46_25225 0.18 +1.2
5,386,081 - IAI46_25225 0.18 +0.2
5,386,081 - IAI46_25225 0.18 +0.3
5,386,083 + IAI46_25225 0.18 +0.3
5,386,084 - IAI46_25225 0.18 +0.1
5,386,084 - IAI46_25225 0.18 +0.2
5,386,103 - IAI46_25225 0.20 -0.5
5,386,170 + IAI46_25225 0.26 +0.6
5,386,170 + IAI46_25225 0.26 +0.0
5,386,170 + IAI46_25225 0.26 +0.7
5,386,171 - IAI46_25225 0.26 -0.1
5,386,171 - IAI46_25225 0.26 +0.8
5,386,172 + IAI46_25225 0.27 +1.9
5,386,172 + IAI46_25225 0.27 +0.5
5,386,172 + IAI46_25225 0.27 -1.5
5,386,172 + IAI46_25225 0.27 +0.2
5,386,172 + IAI46_25225 0.27 +0.9
5,386,172 + IAI46_25225 0.27 -0.7
5,386,172 + IAI46_25225 0.27 +0.9
5,386,173 - IAI46_25225 0.27 -0.5
5,386,173 - IAI46_25225 0.27 -0.1
5,386,173 - IAI46_25225 0.27 +0.1
5,386,173 - IAI46_25225 0.27 +0.1
5,386,173 - IAI46_25225 0.27 +0.0
5,386,173 - IAI46_25225 0.27 -0.3
5,386,173 - IAI46_25225 0.27 -0.5
5,386,183 - IAI46_25225 0.28 +0.4
5,386,236 + IAI46_25225 0.33 -0.1
5,386,237 - IAI46_25225 0.33 -0.8
5,386,259 + IAI46_25225 0.35 +0.2
5,386,317 + IAI46_25225 0.40 +0.7
5,386,318 - IAI46_25225 0.40 +0.1
5,386,318 - IAI46_25225 0.40 -0.2
5,386,374 + IAI46_25225 0.46 -1.2
5,386,374 + IAI46_25225 0.46 +0.2
5,386,374 + IAI46_25225 0.46 +0.0
5,386,375 - IAI46_25225 0.46 -1.3
5,386,375 - IAI46_25225 0.46 +0.1
5,386,394 - IAI46_25225 0.48 +0.2
5,386,437 + IAI46_25225 0.52 -0.1
5,386,438 - IAI46_25225 0.52 +0.4
5,386,441 + IAI46_25225 0.52 -0.5
5,386,441 + IAI46_25225 0.52 +0.1
5,386,441 + IAI46_25225 0.52 +0.4
5,386,441 + IAI46_25225 0.52 -0.2
5,386,441 + IAI46_25225 0.52 -0.0
5,386,442 - IAI46_25225 0.52 +0.4
5,386,449 + IAI46_25225 0.53 +0.8
5,386,449 + IAI46_25225 0.53 -1.7
5,386,449 + IAI46_25225 0.53 -0.1
5,386,450 - IAI46_25225 0.53 +0.7
5,386,450 - IAI46_25225 0.53 +0.4
5,386,501 - IAI46_25225 0.58 +0.0
5,386,501 - IAI46_25225 0.58 +0.5
5,386,501 - IAI46_25225 0.58 +1.0
5,386,518 + IAI46_25225 0.60 -1.2
5,386,572 + IAI46_25225 0.65 +0.1
5,386,572 + IAI46_25225 0.65 +0.3
5,386,573 - IAI46_25225 0.65 +0.7
5,386,573 - IAI46_25225 0.65 -0.4
5,386,573 - IAI46_25225 0.65 -0.1
5,386,573 - IAI46_25225 0.65 +0.1
5,386,595 - IAI46_25225 0.67 +0.1
5,386,623 + IAI46_25225 0.70 -0.1
5,386,623 + IAI46_25225 0.70 -0.1
5,386,623 + IAI46_25225 0.70 +0.2
5,386,623 + IAI46_25225 0.70 +0.1
5,386,623 + IAI46_25225 0.70 -0.0
5,386,623 + IAI46_25225 0.70 -0.6
5,386,624 - IAI46_25225 0.70 -0.3
5,386,624 - IAI46_25225 0.70 +1.1
5,386,624 - IAI46_25225 0.70 +0.9
5,386,624 - IAI46_25225 0.70 +0.9
5,386,624 - IAI46_25225 0.70 +0.4
5,386,624 - IAI46_25225 0.70 -0.8
5,386,624 - IAI46_25225 0.70 +0.3
5,386,626 + IAI46_25225 0.70 +0.0
5,386,626 + IAI46_25225 0.70 -0.9
5,386,626 + IAI46_25225 0.70 +0.5
5,386,626 + IAI46_25225 0.70 +0.9
5,386,626 + IAI46_25225 0.70 -1.0
5,386,627 - IAI46_25225 0.70 +0.7
5,386,627 - IAI46_25225 0.70 +0.1
5,386,627 - IAI46_25225 0.70 -0.7
5,386,627 - IAI46_25225 0.70 +0.1
5,386,629 + IAI46_25225 0.70 -0.5
5,386,629 + IAI46_25225 0.70 +0.8
5,386,629 + IAI46_25225 0.70 +0.6
5,386,727 + IAI46_25225 0.79 +0.3
5,386,727 + IAI46_25225 0.79 -1.0
5,386,727 + IAI46_25225 0.79 +0.1
5,386,728 - IAI46_25225 0.80 -1.0
5,386,728 - IAI46_25225 0.80 -0.1
5,386,728 - IAI46_25225 0.80 -0.0
5,386,762 - IAI46_25225 0.83 +0.5
5,386,834 + IAI46_25225 0.90 -1.0
5,386,834 + IAI46_25225 0.90 +0.7
5,386,835 - IAI46_25225 0.90 +0.6
5,386,835 - IAI46_25225 0.90 -0.1
5,386,838 + -0.8
5,386,839 - -0.6
5,386,893 - -0.5
5,386,916 + +0.7
5,386,920 - -0.3
5,386,962 + +0.1
5,387,058 + -0.2
5,387,141 - IAI46_25230 0.18 +0.2
5,387,252 - IAI46_25230 0.38 +0.1
5,387,252 - IAI46_25230 0.38 +0.7
5,387,252 - IAI46_25230 0.38 -0.5
5,387,252 - IAI46_25230 0.38 -0.4
5,387,349 + IAI46_25230 0.55 +0.6
5,387,350 - IAI46_25230 0.55 -0.1
5,387,350 - IAI46_25230 0.55 -0.1
5,387,350 - IAI46_25230 0.55 -0.1
5,387,350 - IAI46_25230 0.55 -1.1
5,387,354 - IAI46_25230 0.56 +0.3
5,387,354 - IAI46_25230 0.56 -0.1
5,387,354 - IAI46_25230 0.56 -0.3
5,387,355 + IAI46_25230 0.56 -0.4
5,387,355 + IAI46_25230 0.56 +0.2
5,387,457 + IAI46_25230 0.74 -0.2
5,387,457 + IAI46_25230 0.74 -0.6
5,387,458 - IAI46_25230 0.74 -0.8
5,387,458 - IAI46_25230 0.74 +0.9
5,387,458 - IAI46_25230 0.74 +1.0
5,387,589 - -1.0
5,387,640 + +0.0
5,387,640 + -0.2
5,387,640 + -0.0
5,387,641 - -0.8
5,387,641 - +0.5
5,387,655 + +0.5
5,387,655 + +1.0
5,387,655 + -0.0
5,387,655 + -0.2
5,387,655 + -0.2
5,387,655 + -0.9
5,387,656 - -0.1
5,387,656 - -0.1
5,387,681 + -0.3
5,387,697 - +0.2
5,387,701 - -0.7
5,387,731 - +1.7
5,387,749 + +1.1
5,387,749 + +0.6
5,387,877 + IAI46_25235 0.13 +0.4
5,387,888 + IAI46_25235 0.14 +0.2
5,387,888 + IAI46_25235 0.14 -0.1
5,387,888 + IAI46_25235 0.14 +1.0
5,387,888 + IAI46_25235 0.14 -0.2
5,387,900 - IAI46_25235 0.16 +0.4
5,387,900 - IAI46_25235 0.16 +1.1
5,387,900 - IAI46_25235 0.16 +0.1
5,387,945 + IAI46_25235 0.22 -0.9
5,388,042 + IAI46_25235 0.35 +0.3
5,388,172 - IAI46_25235 0.53 -0.3
5,388,245 - IAI46_25235 0.63 -0.3
5,388,261 - IAI46_25235 0.66 -0.6
5,388,313 - IAI46_25235 0.73 +0.0
5,388,356 + IAI46_25235 0.79 -0.0
5,388,356 + IAI46_25235 0.79 +0.2
5,388,356 + IAI46_25235 0.79 +0.3
5,388,356 + IAI46_25235 0.79 +0.5
5,388,511 + +0.1
5,388,523 - +0.4
5,388,523 - +0.4
5,388,554 + -0.2
5,388,554 + -0.0
5,388,560 - +0.2
5,388,595 - -0.3

Or see this region's nucleotide sequence