Strain Fitness in Serratia liquefaciens MT49 around IAI46_25165

Experiment: Cobalt chloride 60 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_25155 and IAI46_25160 are separated by 20 nucleotidesIAI46_25160 and IAI46_25165 are separated by 296 nucleotidesIAI46_25165 and IAI46_25170 are separated by 291 nucleotides IAI46_25155: IAI46_25155 - F0F1 ATP synthase subunit beta, at 5,370,458 to 5,371,840 _25155 IAI46_25160: IAI46_25160 - F0F1 ATP synthase subunit epsilon, at 5,371,861 to 5,372,280 _25160 IAI46_25165: IAI46_25165 - bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU, at 5,372,577 to 5,373,947 _25165 IAI46_25170: IAI46_25170 - glutamine--fructose-6-phosphate transaminase (isomerizing), at 5,374,239 to 5,376,068 _25170 Position (kb) 5372 5373 5374Strain fitness (log2 ratio) -2 -1 0 1 2at 5371.838 kb on + strandat 5372.154 kb on + strand, within IAI46_25160at 5372.203 kb on + strand, within IAI46_25160at 5372.203 kb on + strand, within IAI46_25160at 5372.203 kb on + strand, within IAI46_25160at 5372.204 kb on - strand, within IAI46_25160at 5372.385 kb on + strandat 5372.385 kb on + strandat 5372.385 kb on + strandat 5372.385 kb on + strandat 5372.385 kb on + strandat 5372.385 kb on + strandat 5372.385 kb on + strandat 5372.385 kb on + strandat 5372.386 kb on - strandat 5372.386 kb on - strandat 5372.387 kb on + strandat 5372.388 kb on - strandat 5372.474 kb on - strandat 5372.512 kb on - strandat 5372.512 kb on - strandat 5372.518 kb on + strandat 5372.518 kb on + strandat 5372.521 kb on + strandat 5372.521 kb on + strandat 5372.540 kb on + strandat 5373.945 kb on + strandat 5373.945 kb on + strandat 5373.946 kb on - strandat 5374.003 kb on + strandat 5374.004 kb on - strandat 5374.004 kb on - strandat 5374.011 kb on + strandat 5374.011 kb on + strandat 5374.011 kb on + strandat 5374.012 kb on - strandat 5374.012 kb on - strandat 5374.042 kb on + strandat 5374.043 kb on - strandat 5374.077 kb on + strandat 5374.077 kb on + strandat 5374.077 kb on + strandat 5374.077 kb on + strandat 5374.077 kb on + strandat 5374.078 kb on - strandat 5374.078 kb on - strandat 5374.078 kb on - strandat 5374.078 kb on - strandat 5374.080 kb on + strandat 5374.080 kb on + strandat 5374.080 kb on + strandat 5374.081 kb on - strandat 5374.098 kb on + strandat 5374.098 kb on + strandat 5374.098 kb on + strandat 5374.113 kb on + strandat 5374.132 kb on + strandat 5374.135 kb on + strandat 5374.135 kb on + strandat 5374.149 kb on + strandat 5374.149 kb on + strandat 5374.149 kb on + strandat 5374.149 kb on + strandat 5374.170 kb on + strandat 5374.225 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 60 uM, anaerobic
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5,371,838 + -0.8
5,372,154 + IAI46_25160 0.70 -0.5
5,372,203 + IAI46_25160 0.81 +0.1
5,372,203 + IAI46_25160 0.81 -0.1
5,372,203 + IAI46_25160 0.81 -0.2
5,372,204 - IAI46_25160 0.82 +0.8
5,372,385 + +0.4
5,372,385 + +0.3
5,372,385 + -0.0
5,372,385 + -1.7
5,372,385 + -0.1
5,372,385 + -0.5
5,372,385 + -0.5
5,372,385 + +2.0
5,372,386 - +0.2
5,372,386 - -0.3
5,372,387 + -0.3
5,372,388 - -0.1
5,372,474 - +0.1
5,372,512 - +0.3
5,372,512 - -0.3
5,372,518 + +0.5
5,372,518 + -0.4
5,372,521 + -1.2
5,372,521 + +0.3
5,372,540 + +0.2
5,373,945 + +0.5
5,373,945 + -0.9
5,373,946 - +0.4
5,374,003 + -0.2
5,374,004 - -0.9
5,374,004 - -1.3
5,374,011 + +1.2
5,374,011 + +0.2
5,374,011 + -1.0
5,374,012 - -0.5
5,374,012 - -0.2
5,374,042 + -0.1
5,374,043 - +1.4
5,374,077 + +0.2
5,374,077 + -0.1
5,374,077 + -0.2
5,374,077 + -0.9
5,374,077 + -0.7
5,374,078 - -1.1
5,374,078 - -0.6
5,374,078 - -1.0
5,374,078 - -1.9
5,374,080 + +0.6
5,374,080 + -0.2
5,374,080 + +0.8
5,374,081 - -1.4
5,374,098 + -0.9
5,374,098 + +0.6
5,374,098 + -0.1
5,374,113 + +0.1
5,374,132 + -0.1
5,374,135 + +1.2
5,374,135 + +0.5
5,374,149 + +0.8
5,374,149 + -0.3
5,374,149 + -1.7
5,374,149 + +0.6
5,374,170 + -0.3
5,374,225 + +0.9

Or see this region's nucleotide sequence