Strain Fitness in Serratia liquefaciens MT49 around IAI46_24635

Experiment: Cobalt chloride 60 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_24625 and IAI46_24630 are separated by 199 nucleotidesIAI46_24630 and IAI46_24635 are separated by 127 nucleotidesIAI46_24635 and IAI46_24640 are separated by 68 nucleotides IAI46_24625: IAI46_24625 - DUF805 domain-containing protein, at 5,259,155 to 5,259,580 _24625 IAI46_24630: IAI46_24630 - YiiQ family protein, at 5,259,780 to 5,260,370 _24630 IAI46_24635: IAI46_24635 - triose-phosphate isomerase, at 5,260,498 to 5,261,265 _24635 IAI46_24640: IAI46_24640 - sulfate ABC transporter substrate-binding protein, at 5,261,334 to 5,262,323 _24640 Position (kb) 5260 5261 5262Strain fitness (log2 ratio) -2 -1 0 1 2at 5259.500 kb on + strand, within IAI46_24625at 5259.572 kb on + strandat 5259.573 kb on - strandat 5259.573 kb on - strandat 5259.573 kb on - strandat 5259.573 kb on - strandat 5259.624 kb on + strandat 5259.624 kb on + strandat 5259.624 kb on + strandat 5259.624 kb on + strandat 5259.624 kb on + strandat 5259.625 kb on - strandat 5259.625 kb on - strandat 5259.629 kb on + strandat 5259.629 kb on + strandat 5259.630 kb on - strandat 5259.672 kb on + strandat 5259.672 kb on + strandat 5259.774 kb on + strandat 5259.774 kb on + strandat 5259.774 kb on + strandat 5259.774 kb on + strandat 5259.775 kb on - strandat 5259.775 kb on - strandat 5259.775 kb on - strandat 5259.776 kb on + strandat 5259.776 kb on + strandat 5259.776 kb on + strandat 5259.776 kb on + strandat 5259.776 kb on + strandat 5259.776 kb on + strandat 5259.777 kb on - strandat 5259.777 kb on - strandat 5259.777 kb on - strandat 5259.777 kb on - strandat 5259.778 kb on - strandat 5259.882 kb on + strand, within IAI46_24630at 5259.883 kb on - strand, within IAI46_24630at 5259.939 kb on + strand, within IAI46_24630at 5259.941 kb on + strand, within IAI46_24630at 5259.983 kb on + strand, within IAI46_24630at 5260.036 kb on + strand, within IAI46_24630at 5260.036 kb on + strand, within IAI46_24630at 5260.037 kb on - strand, within IAI46_24630at 5260.103 kb on + strand, within IAI46_24630at 5260.104 kb on - strand, within IAI46_24630at 5260.164 kb on + strand, within IAI46_24630at 5260.164 kb on + strand, within IAI46_24630at 5260.164 kb on + strand, within IAI46_24630at 5260.165 kb on - strand, within IAI46_24630at 5260.165 kb on - strand, within IAI46_24630at 5260.166 kb on + strand, within IAI46_24630at 5260.167 kb on - strand, within IAI46_24630at 5260.167 kb on - strand, within IAI46_24630at 5260.293 kb on + strand, within IAI46_24630at 5260.293 kb on + strand, within IAI46_24630at 5260.293 kb on + strand, within IAI46_24630at 5260.293 kb on + strand, within IAI46_24630at 5260.297 kb on + strand, within IAI46_24630at 5260.297 kb on + strand, within IAI46_24630at 5260.298 kb on - strand, within IAI46_24630at 5260.324 kb on + strandat 5260.347 kb on - strandat 5260.379 kb on + strandat 5260.383 kb on + strandat 5260.412 kb on - strandat 5260.412 kb on - strandat 5260.421 kb on + strandat 5260.421 kb on + strandat 5260.421 kb on + strandat 5260.422 kb on - strandat 5260.423 kb on + strandat 5260.522 kb on - strandat 5261.288 kb on - strandat 5261.288 kb on - strandat 5261.315 kb on + strandat 5261.379 kb on + strandat 5261.411 kb on + strandat 5261.412 kb on - strandat 5261.488 kb on + strand, within IAI46_24640at 5261.488 kb on + strand, within IAI46_24640at 5261.489 kb on - strand, within IAI46_24640at 5261.491 kb on + strand, within IAI46_24640at 5261.492 kb on - strand, within IAI46_24640at 5261.525 kb on + strand, within IAI46_24640at 5261.527 kb on + strand, within IAI46_24640at 5261.528 kb on - strand, within IAI46_24640at 5261.528 kb on - strand, within IAI46_24640at 5261.528 kb on - strand, within IAI46_24640at 5261.533 kb on + strand, within IAI46_24640at 5261.534 kb on - strand, within IAI46_24640at 5261.534 kb on - strand, within IAI46_24640at 5261.543 kb on - strand, within IAI46_24640at 5261.574 kb on - strand, within IAI46_24640at 5261.585 kb on + strand, within IAI46_24640at 5261.586 kb on - strand, within IAI46_24640at 5261.636 kb on + strand, within IAI46_24640at 5261.732 kb on + strand, within IAI46_24640at 5261.733 kb on - strand, within IAI46_24640at 5261.777 kb on + strand, within IAI46_24640at 5261.777 kb on + strand, within IAI46_24640at 5261.778 kb on - strand, within IAI46_24640at 5261.779 kb on + strand, within IAI46_24640at 5261.779 kb on + strand, within IAI46_24640at 5261.779 kb on + strand, within IAI46_24640at 5261.780 kb on - strand, within IAI46_24640at 5261.819 kb on + strand, within IAI46_24640at 5261.820 kb on - strand, within IAI46_24640at 5261.857 kb on + strand, within IAI46_24640at 5261.857 kb on + strand, within IAI46_24640at 5261.857 kb on + strand, within IAI46_24640at 5261.858 kb on - strand, within IAI46_24640at 5261.858 kb on - strand, within IAI46_24640at 5261.858 kb on - strand, within IAI46_24640at 5261.973 kb on + strand, within IAI46_24640at 5261.974 kb on - strand, within IAI46_24640at 5261.974 kb on - strand, within IAI46_24640at 5261.974 kb on - strand, within IAI46_24640at 5261.987 kb on + strand, within IAI46_24640at 5261.988 kb on - strand, within IAI46_24640at 5261.988 kb on - strand, within IAI46_24640at 5261.988 kb on - strand, within IAI46_24640at 5261.988 kb on - strand, within IAI46_24640at 5261.989 kb on + strand, within IAI46_24640at 5261.989 kb on + strand, within IAI46_24640at 5261.989 kb on + strand, within IAI46_24640at 5261.990 kb on - strand, within IAI46_24640at 5261.990 kb on - strand, within IAI46_24640at 5261.990 kb on - strand, within IAI46_24640at 5261.990 kb on - strand, within IAI46_24640at 5261.990 kb on - strand, within IAI46_24640at 5261.990 kb on - strand, within IAI46_24640at 5261.990 kb on - strand, within IAI46_24640at 5261.990 kb on - strand, within IAI46_24640at 5261.990 kb on - strand, within IAI46_24640at 5261.990 kb on - strand, within IAI46_24640at 5262.030 kb on - strand, within IAI46_24640at 5262.067 kb on + strand, within IAI46_24640at 5262.067 kb on + strand, within IAI46_24640at 5262.068 kb on - strand, within IAI46_24640at 5262.153 kb on + strand, within IAI46_24640at 5262.154 kb on - strand, within IAI46_24640at 5262.188 kb on - strand, within IAI46_24640at 5262.188 kb on - strand, within IAI46_24640at 5262.192 kb on - strand, within IAI46_24640at 5262.192 kb on - strand, within IAI46_24640at 5262.206 kb on + strand, within IAI46_24640at 5262.206 kb on + strand, within IAI46_24640at 5262.206 kb on + strand, within IAI46_24640at 5262.206 kb on + strand, within IAI46_24640at 5262.207 kb on - strand, within IAI46_24640at 5262.207 kb on - strand, within IAI46_24640at 5262.207 kb on - strand, within IAI46_24640at 5262.207 kb on - strand, within IAI46_24640at 5262.208 kb on + strand, within IAI46_24640at 5262.208 kb on + strand, within IAI46_24640at 5262.208 kb on + strand, within IAI46_24640at 5262.208 kb on + strand, within IAI46_24640at 5262.208 kb on + strand, within IAI46_24640at 5262.209 kb on - strand, within IAI46_24640at 5262.209 kb on - strand, within IAI46_24640at 5262.218 kb on - strand, within IAI46_24640at 5262.218 kb on - strand, within IAI46_24640at 5262.238 kb on + strandat 5262.261 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 60 uM, anaerobic
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5,259,500 + IAI46_24625 0.81 +1.2
5,259,572 + -2.4
5,259,573 - -0.5
5,259,573 - +0.5
5,259,573 - +0.2
5,259,573 - -1.1
5,259,624 + -0.4
5,259,624 + +0.4
5,259,624 + +0.8
5,259,624 + +0.1
5,259,624 + -0.3
5,259,625 - +0.6
5,259,625 - +0.6
5,259,629 + -0.4
5,259,629 + +0.6
5,259,630 - +1.1
5,259,672 + +0.5
5,259,672 + +0.5
5,259,774 + -0.6
5,259,774 + +0.3
5,259,774 + +0.1
5,259,774 + +0.1
5,259,775 - +0.4
5,259,775 - +1.0
5,259,775 - -1.7
5,259,776 + +0.4
5,259,776 + +0.7
5,259,776 + +0.6
5,259,776 + -0.2
5,259,776 + +0.2
5,259,776 + +0.2
5,259,777 - +0.4
5,259,777 - +0.6
5,259,777 - -0.2
5,259,777 - +0.6
5,259,778 - -0.2
5,259,882 + IAI46_24630 0.17 -0.6
5,259,883 - IAI46_24630 0.17 -0.4
5,259,939 + IAI46_24630 0.27 -0.7
5,259,941 + IAI46_24630 0.27 -0.3
5,259,983 + IAI46_24630 0.34 +0.1
5,260,036 + IAI46_24630 0.43 +0.3
5,260,036 + IAI46_24630 0.43 -0.4
5,260,037 - IAI46_24630 0.43 +0.8
5,260,103 + IAI46_24630 0.55 -0.9
5,260,104 - IAI46_24630 0.55 +0.1
5,260,164 + IAI46_24630 0.65 +1.3
5,260,164 + IAI46_24630 0.65 -1.0
5,260,164 + IAI46_24630 0.65 -0.3
5,260,165 - IAI46_24630 0.65 +0.1
5,260,165 - IAI46_24630 0.65 +0.9
5,260,166 + IAI46_24630 0.65 +0.7
5,260,167 - IAI46_24630 0.65 +0.3
5,260,167 - IAI46_24630 0.65 -0.3
5,260,293 + IAI46_24630 0.87 -1.0
5,260,293 + IAI46_24630 0.87 +0.5
5,260,293 + IAI46_24630 0.87 -0.3
5,260,293 + IAI46_24630 0.87 +0.3
5,260,297 + IAI46_24630 0.87 +2.2
5,260,297 + IAI46_24630 0.87 -0.2
5,260,298 - IAI46_24630 0.88 +0.4
5,260,324 + +0.5
5,260,347 - -1.2
5,260,379 + -1.4
5,260,383 + +2.3
5,260,412 - -1.7
5,260,412 - -1.0
5,260,421 + -0.5
5,260,421 + -0.4
5,260,421 + +0.1
5,260,422 - -1.5
5,260,423 + +0.2
5,260,522 - +0.1
5,261,288 - +0.2
5,261,288 - -0.0
5,261,315 + -0.7
5,261,379 + +0.9
5,261,411 + +0.4
5,261,412 - -0.2
5,261,488 + IAI46_24640 0.16 -0.5
5,261,488 + IAI46_24640 0.16 +0.4
5,261,489 - IAI46_24640 0.16 -0.3
5,261,491 + IAI46_24640 0.16 -0.1
5,261,492 - IAI46_24640 0.16 -1.9
5,261,525 + IAI46_24640 0.19 +0.2
5,261,527 + IAI46_24640 0.19 -0.3
5,261,528 - IAI46_24640 0.20 +0.2
5,261,528 - IAI46_24640 0.20 -0.2
5,261,528 - IAI46_24640 0.20 +0.1
5,261,533 + IAI46_24640 0.20 -0.8
5,261,534 - IAI46_24640 0.20 -0.4
5,261,534 - IAI46_24640 0.20 +0.3
5,261,543 - IAI46_24640 0.21 +0.5
5,261,574 - IAI46_24640 0.24 -0.0
5,261,585 + IAI46_24640 0.25 +0.5
5,261,586 - IAI46_24640 0.25 +0.7
5,261,636 + IAI46_24640 0.31 +0.1
5,261,732 + IAI46_24640 0.40 -0.6
5,261,733 - IAI46_24640 0.40 -0.6
5,261,777 + IAI46_24640 0.45 +0.4
5,261,777 + IAI46_24640 0.45 +0.3
5,261,778 - IAI46_24640 0.45 -0.1
5,261,779 + IAI46_24640 0.45 +1.2
5,261,779 + IAI46_24640 0.45 +0.2
5,261,779 + IAI46_24640 0.45 -0.0
5,261,780 - IAI46_24640 0.45 +0.3
5,261,819 + IAI46_24640 0.49 +0.1
5,261,820 - IAI46_24640 0.49 -0.4
5,261,857 + IAI46_24640 0.53 -0.9
5,261,857 + IAI46_24640 0.53 +1.2
5,261,857 + IAI46_24640 0.53 +0.5
5,261,858 - IAI46_24640 0.53 -0.6
5,261,858 - IAI46_24640 0.53 +0.5
5,261,858 - IAI46_24640 0.53 +0.2
5,261,973 + IAI46_24640 0.65 +0.4
5,261,974 - IAI46_24640 0.65 -0.8
5,261,974 - IAI46_24640 0.65 -0.1
5,261,974 - IAI46_24640 0.65 +0.6
5,261,987 + IAI46_24640 0.66 -0.2
5,261,988 - IAI46_24640 0.66 -0.0
5,261,988 - IAI46_24640 0.66 -0.2
5,261,988 - IAI46_24640 0.66 -2.1
5,261,988 - IAI46_24640 0.66 -0.4
5,261,989 + IAI46_24640 0.66 +1.9
5,261,989 + IAI46_24640 0.66 -0.2
5,261,989 + IAI46_24640 0.66 +0.3
5,261,990 - IAI46_24640 0.66 -0.5
5,261,990 - IAI46_24640 0.66 -0.1
5,261,990 - IAI46_24640 0.66 +0.5
5,261,990 - IAI46_24640 0.66 -0.2
5,261,990 - IAI46_24640 0.66 +0.4
5,261,990 - IAI46_24640 0.66 +0.5
5,261,990 - IAI46_24640 0.66 -0.2
5,261,990 - IAI46_24640 0.66 -0.6
5,261,990 - IAI46_24640 0.66 -0.3
5,261,990 - IAI46_24640 0.66 +0.7
5,262,030 - IAI46_24640 0.70 -0.6
5,262,067 + IAI46_24640 0.74 -1.4
5,262,067 + IAI46_24640 0.74 -0.1
5,262,068 - IAI46_24640 0.74 -1.0
5,262,153 + IAI46_24640 0.83 +0.7
5,262,154 - IAI46_24640 0.83 -0.2
5,262,188 - IAI46_24640 0.86 -0.2
5,262,188 - IAI46_24640 0.86 +0.7
5,262,192 - IAI46_24640 0.87 -0.2
5,262,192 - IAI46_24640 0.87 +0.5
5,262,206 + IAI46_24640 0.88 +0.3
5,262,206 + IAI46_24640 0.88 +0.4
5,262,206 + IAI46_24640 0.88 +0.6
5,262,206 + IAI46_24640 0.88 +0.1
5,262,207 - IAI46_24640 0.88 +0.3
5,262,207 - IAI46_24640 0.88 +0.6
5,262,207 - IAI46_24640 0.88 +0.3
5,262,207 - IAI46_24640 0.88 -1.1
5,262,208 + IAI46_24640 0.88 +0.1
5,262,208 + IAI46_24640 0.88 +0.1
5,262,208 + IAI46_24640 0.88 -0.3
5,262,208 + IAI46_24640 0.88 -1.5
5,262,208 + IAI46_24640 0.88 +0.1
5,262,209 - IAI46_24640 0.88 -0.1
5,262,209 - IAI46_24640 0.88 +0.2
5,262,218 - IAI46_24640 0.89 +0.0
5,262,218 - IAI46_24640 0.89 +1.0
5,262,238 + -0.5
5,262,261 - +0.1

Or see this region's nucleotide sequence