Strain Fitness in Serratia liquefaciens MT49 around IAI46_24455

Experiment: Cobalt chloride 60 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_24450 and IAI46_24455 are separated by 401 nucleotidesIAI46_24455 and IAI46_24460 are separated by 42 nucleotidesIAI46_24460 and IAI46_24465 are separated by 14 nucleotides IAI46_24450: IAI46_24450 - TonB-dependent vitamin B12 receptor BtuB, at 5,218,550 to 5,220,421 _24450 IAI46_24455: IAI46_24455 - tRNA (uridine(54)-C5)-methyltransferase TrmA, at 5,220,823 to 5,221,926 _24455 IAI46_24460: IAI46_24460 - YijD family membrane protein, at 5,221,969 to 5,222,337 _24460 IAI46_24465: IAI46_24465 - HTH-type transcriptional repressor FabR, at 5,222,352 to 5,222,984 _24465 Position (kb) 5220 5221 5222Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5219.823 kb on + strand, within IAI46_24450at 5219.823 kb on + strand, within IAI46_24450at 5219.823 kb on + strand, within IAI46_24450at 5219.823 kb on + strand, within IAI46_24450at 5219.824 kb on - strand, within IAI46_24450at 5219.824 kb on - strand, within IAI46_24450at 5219.829 kb on + strand, within IAI46_24450at 5219.829 kb on + strand, within IAI46_24450at 5219.829 kb on + strand, within IAI46_24450at 5219.829 kb on + strand, within IAI46_24450at 5219.829 kb on + strand, within IAI46_24450at 5219.829 kb on + strand, within IAI46_24450at 5219.829 kb on + strand, within IAI46_24450at 5219.829 kb on + strand, within IAI46_24450at 5219.829 kb on + strand, within IAI46_24450at 5219.830 kb on - strand, within IAI46_24450at 5219.830 kb on - strand, within IAI46_24450at 5219.830 kb on - strand, within IAI46_24450at 5219.830 kb on - strand, within IAI46_24450at 5219.830 kb on - strand, within IAI46_24450at 5219.830 kb on - strand, within IAI46_24450at 5219.830 kb on - strand, within IAI46_24450at 5219.830 kb on - strand, within IAI46_24450at 5219.833 kb on + strand, within IAI46_24450at 5219.890 kb on - strand, within IAI46_24450at 5219.890 kb on - strand, within IAI46_24450at 5219.929 kb on + strand, within IAI46_24450at 5219.953 kb on + strand, within IAI46_24450at 5219.953 kb on + strand, within IAI46_24450at 5219.953 kb on + strand, within IAI46_24450at 5219.953 kb on + strand, within IAI46_24450at 5219.953 kb on + strand, within IAI46_24450at 5219.954 kb on - strand, within IAI46_24450at 5219.954 kb on - strand, within IAI46_24450at 5219.954 kb on - strand, within IAI46_24450at 5219.956 kb on + strand, within IAI46_24450at 5219.957 kb on - strand, within IAI46_24450at 5219.957 kb on - strand, within IAI46_24450at 5219.957 kb on - strand, within IAI46_24450at 5219.991 kb on + strand, within IAI46_24450at 5220.016 kb on + strand, within IAI46_24450at 5220.017 kb on - strand, within IAI46_24450at 5220.017 kb on - strand, within IAI46_24450at 5220.017 kb on - strand, within IAI46_24450at 5220.188 kb on + strand, within IAI46_24450at 5220.334 kb on + strandat 5220.335 kb on - strandat 5220.335 kb on - strandat 5220.439 kb on + strandat 5220.501 kb on - strandat 5220.501 kb on - strandat 5220.544 kb on + strandat 5220.544 kb on + strandat 5220.544 kb on + strandat 5220.544 kb on + strandat 5220.544 kb on + strandat 5220.545 kb on - strandat 5220.545 kb on - strandat 5220.545 kb on - strandat 5220.545 kb on - strandat 5220.545 kb on - strandat 5220.545 kb on - strandat 5220.548 kb on + strandat 5220.549 kb on - strandat 5220.549 kb on - strandat 5220.549 kb on - strandat 5220.597 kb on + strandat 5220.606 kb on - strandat 5220.698 kb on - strandat 5220.698 kb on - strandat 5220.698 kb on - strandat 5220.698 kb on - strandat 5220.698 kb on - strandat 5220.709 kb on - strandat 5220.709 kb on - strandat 5220.709 kb on - strandat 5220.712 kb on + strandat 5220.713 kb on - strandat 5220.713 kb on - strandat 5220.713 kb on - strandat 5220.713 kb on - strandat 5220.720 kb on + strandat 5220.720 kb on + strandat 5220.721 kb on - strandat 5220.729 kb on - strandat 5220.738 kb on - strandat 5220.743 kb on + strandat 5220.743 kb on + strandat 5220.743 kb on + strandat 5220.747 kb on - strandat 5220.783 kb on + strandat 5220.784 kb on - strandat 5220.784 kb on - strandat 5220.844 kb on - strandat 5220.853 kb on + strandat 5220.854 kb on - strandat 5220.854 kb on - strandat 5220.952 kb on + strand, within IAI46_24455at 5220.952 kb on + strand, within IAI46_24455at 5221.000 kb on + strand, within IAI46_24455at 5221.000 kb on + strand, within IAI46_24455at 5221.000 kb on + strand, within IAI46_24455at 5221.000 kb on + strand, within IAI46_24455at 5221.001 kb on - strand, within IAI46_24455at 5221.001 kb on - strand, within IAI46_24455at 5221.001 kb on - strand, within IAI46_24455at 5221.001 kb on - strand, within IAI46_24455at 5221.001 kb on - strand, within IAI46_24455at 5221.120 kb on - strand, within IAI46_24455at 5221.150 kb on + strand, within IAI46_24455at 5221.150 kb on + strand, within IAI46_24455at 5221.151 kb on - strand, within IAI46_24455at 5221.192 kb on + strand, within IAI46_24455at 5221.193 kb on - strand, within IAI46_24455at 5221.201 kb on - strand, within IAI46_24455at 5221.322 kb on - strand, within IAI46_24455at 5221.322 kb on - strand, within IAI46_24455at 5221.412 kb on + strand, within IAI46_24455at 5221.412 kb on + strand, within IAI46_24455at 5221.412 kb on + strand, within IAI46_24455at 5221.412 kb on + strand, within IAI46_24455at 5221.412 kb on + strand, within IAI46_24455at 5221.412 kb on + strand, within IAI46_24455at 5221.412 kb on + strand, within IAI46_24455at 5221.412 kb on + strand, within IAI46_24455at 5221.412 kb on + strand, within IAI46_24455at 5221.413 kb on - strand, within IAI46_24455at 5221.413 kb on - strand, within IAI46_24455at 5221.413 kb on - strand, within IAI46_24455at 5221.474 kb on + strand, within IAI46_24455at 5221.475 kb on - strand, within IAI46_24455at 5221.475 kb on - strand, within IAI46_24455at 5221.513 kb on - strand, within IAI46_24455at 5221.570 kb on + strand, within IAI46_24455at 5221.570 kb on + strand, within IAI46_24455at 5221.571 kb on - strand, within IAI46_24455at 5221.571 kb on - strand, within IAI46_24455at 5221.602 kb on - strand, within IAI46_24455at 5221.602 kb on - strand, within IAI46_24455at 5221.602 kb on - strand, within IAI46_24455at 5221.608 kb on + strand, within IAI46_24455at 5221.678 kb on - strand, within IAI46_24455at 5221.693 kb on + strand, within IAI46_24455at 5221.694 kb on - strand, within IAI46_24455at 5221.694 kb on - strand, within IAI46_24455at 5221.694 kb on - strand, within IAI46_24455at 5221.694 kb on - strand, within IAI46_24455at 5221.694 kb on - strand, within IAI46_24455at 5221.695 kb on + strand, within IAI46_24455at 5221.695 kb on + strand, within IAI46_24455at 5221.696 kb on - strand, within IAI46_24455at 5221.696 kb on - strand, within IAI46_24455at 5221.696 kb on - strand, within IAI46_24455at 5221.752 kb on - strand, within IAI46_24455at 5221.768 kb on + strand, within IAI46_24455at 5221.783 kb on + strand, within IAI46_24455at 5221.784 kb on - strand, within IAI46_24455at 5221.785 kb on + strand, within IAI46_24455at 5221.785 kb on + strand, within IAI46_24455at 5221.785 kb on + strand, within IAI46_24455at 5221.785 kb on + strand, within IAI46_24455at 5221.786 kb on - strand, within IAI46_24455at 5221.786 kb on - strand, within IAI46_24455at 5221.879 kb on + strandat 5221.880 kb on - strandat 5221.904 kb on + strandat 5221.904 kb on + strandat 5221.904 kb on + strandat 5221.980 kb on + strandat 5221.980 kb on + strandat 5221.981 kb on - strandat 5221.981 kb on - strandat 5222.046 kb on + strand, within IAI46_24460at 5222.047 kb on - strand, within IAI46_24460at 5222.064 kb on + strand, within IAI46_24460at 5222.065 kb on - strand, within IAI46_24460at 5222.065 kb on - strand, within IAI46_24460at 5222.065 kb on - strand, within IAI46_24460at 5222.105 kb on + strand, within IAI46_24460at 5222.106 kb on - strand, within IAI46_24460at 5222.106 kb on - strand, within IAI46_24460at 5222.106 kb on - strand, within IAI46_24460at 5222.106 kb on - strand, within IAI46_24460at 5222.145 kb on + strand, within IAI46_24460at 5222.145 kb on + strand, within IAI46_24460at 5222.146 kb on - strand, within IAI46_24460at 5222.146 kb on - strand, within IAI46_24460at 5222.146 kb on - strand, within IAI46_24460at 5222.149 kb on + strand, within IAI46_24460at 5222.149 kb on + strand, within IAI46_24460at 5222.149 kb on + strand, within IAI46_24460at 5222.149 kb on + strand, within IAI46_24460at 5222.150 kb on - strand, within IAI46_24460at 5222.150 kb on - strand, within IAI46_24460at 5222.178 kb on - strand, within IAI46_24460at 5222.178 kb on - strand, within IAI46_24460at 5222.195 kb on + strand, within IAI46_24460at 5222.195 kb on + strand, within IAI46_24460at 5222.195 kb on + strand, within IAI46_24460at 5222.195 kb on + strand, within IAI46_24460at 5222.196 kb on - strand, within IAI46_24460at 5222.196 kb on - strand, within IAI46_24460at 5222.196 kb on - strand, within IAI46_24460at 5222.305 kb on + strandat 5222.306 kb on - strandat 5222.306 kb on - strandat 5222.306 kb on - strandat 5222.306 kb on - strandat 5222.306 kb on - strandat 5222.346 kb on - strandat 5222.356 kb on - strandat 5222.356 kb on - strandat 5222.364 kb on + strandat 5222.365 kb on - strandat 5222.398 kb on + strandat 5222.402 kb on - strandat 5222.516 kb on + strand, within IAI46_24465at 5222.516 kb on + strand, within IAI46_24465at 5222.516 kb on + strand, within IAI46_24465at 5222.516 kb on + strand, within IAI46_24465at 5222.517 kb on - strand, within IAI46_24465at 5222.517 kb on - strand, within IAI46_24465at 5222.517 kb on - strand, within IAI46_24465at 5222.553 kb on - strand, within IAI46_24465at 5222.572 kb on + strand, within IAI46_24465

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 60 uM, anaerobic
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5,219,823 + IAI46_24450 0.68 +0.1
5,219,823 + IAI46_24450 0.68 -0.0
5,219,823 + IAI46_24450 0.68 -0.6
5,219,823 + IAI46_24450 0.68 -0.9
5,219,824 - IAI46_24450 0.68 +0.3
5,219,824 - IAI46_24450 0.68 -0.1
5,219,829 + IAI46_24450 0.68 -0.1
5,219,829 + IAI46_24450 0.68 -0.0
5,219,829 + IAI46_24450 0.68 -0.6
5,219,829 + IAI46_24450 0.68 -0.3
5,219,829 + IAI46_24450 0.68 +0.4
5,219,829 + IAI46_24450 0.68 +0.6
5,219,829 + IAI46_24450 0.68 +0.2
5,219,829 + IAI46_24450 0.68 +0.6
5,219,829 + IAI46_24450 0.68 +0.1
5,219,830 - IAI46_24450 0.68 +0.3
5,219,830 - IAI46_24450 0.68 -2.2
5,219,830 - IAI46_24450 0.68 -0.1
5,219,830 - IAI46_24450 0.68 +0.5
5,219,830 - IAI46_24450 0.68 -0.5
5,219,830 - IAI46_24450 0.68 +0.7
5,219,830 - IAI46_24450 0.68 +0.6
5,219,830 - IAI46_24450 0.68 +0.1
5,219,833 + IAI46_24450 0.69 -0.4
5,219,890 - IAI46_24450 0.72 -0.0
5,219,890 - IAI46_24450 0.72 +0.9
5,219,929 + IAI46_24450 0.74 -0.1
5,219,953 + IAI46_24450 0.75 +1.0
5,219,953 + IAI46_24450 0.75 +0.5
5,219,953 + IAI46_24450 0.75 -1.0
5,219,953 + IAI46_24450 0.75 +0.7
5,219,953 + IAI46_24450 0.75 -0.2
5,219,954 - IAI46_24450 0.75 +0.1
5,219,954 - IAI46_24450 0.75 -1.6
5,219,954 - IAI46_24450 0.75 -1.1
5,219,956 + IAI46_24450 0.75 -0.4
5,219,957 - IAI46_24450 0.75 -0.4
5,219,957 - IAI46_24450 0.75 +0.4
5,219,957 - IAI46_24450 0.75 +0.8
5,219,991 + IAI46_24450 0.77 +0.3
5,220,016 + IAI46_24450 0.78 +0.6
5,220,017 - IAI46_24450 0.78 +0.7
5,220,017 - IAI46_24450 0.78 +0.2
5,220,017 - IAI46_24450 0.78 +0.5
5,220,188 + IAI46_24450 0.88 -0.6
5,220,334 + -0.4
5,220,335 - +0.8
5,220,335 - -0.2
5,220,439 + +0.0
5,220,501 - +0.1
5,220,501 - -0.6
5,220,544 + +0.4
5,220,544 + +0.5
5,220,544 + +0.2
5,220,544 + -0.2
5,220,544 + -0.3
5,220,545 - +0.5
5,220,545 - +0.5
5,220,545 - -0.9
5,220,545 - +1.3
5,220,545 - -0.1
5,220,545 - +0.8
5,220,548 + +0.1
5,220,549 - +0.0
5,220,549 - -0.7
5,220,549 - +0.2
5,220,597 + +0.1
5,220,606 - -0.3
5,220,698 - +0.2
5,220,698 - -0.5
5,220,698 - +0.2
5,220,698 - -0.5
5,220,698 - -0.6
5,220,709 - +0.4
5,220,709 - +0.8
5,220,709 - -0.0
5,220,712 + +1.3
5,220,713 - +0.6
5,220,713 - +0.3
5,220,713 - +0.1
5,220,713 - -0.5
5,220,720 + -1.3
5,220,720 + +0.2
5,220,721 - -0.7
5,220,729 - -0.1
5,220,738 - -0.2
5,220,743 + -0.9
5,220,743 + +1.5
5,220,743 + +0.4
5,220,747 - +0.2
5,220,783 + -0.4
5,220,784 - -0.6
5,220,784 - +0.7
5,220,844 - -0.3
5,220,853 + +0.4
5,220,854 - +0.7
5,220,854 - +0.1
5,220,952 + IAI46_24455 0.12 -1.2
5,220,952 + IAI46_24455 0.12 -0.1
5,221,000 + IAI46_24455 0.16 -0.1
5,221,000 + IAI46_24455 0.16 -0.8
5,221,000 + IAI46_24455 0.16 +0.4
5,221,000 + IAI46_24455 0.16 +1.1
5,221,001 - IAI46_24455 0.16 +0.3
5,221,001 - IAI46_24455 0.16 +0.8
5,221,001 - IAI46_24455 0.16 -0.0
5,221,001 - IAI46_24455 0.16 -1.1
5,221,001 - IAI46_24455 0.16 -0.3
5,221,120 - IAI46_24455 0.27 +0.7
5,221,150 + IAI46_24455 0.30 +1.1
5,221,150 + IAI46_24455 0.30 +0.1
5,221,151 - IAI46_24455 0.30 -1.1
5,221,192 + IAI46_24455 0.33 +0.6
5,221,193 - IAI46_24455 0.34 +0.8
5,221,201 - IAI46_24455 0.34 +0.5
5,221,322 - IAI46_24455 0.45 -0.0
5,221,322 - IAI46_24455 0.45 +0.2
5,221,412 + IAI46_24455 0.53 -0.2
5,221,412 + IAI46_24455 0.53 -0.4
5,221,412 + IAI46_24455 0.53 +0.1
5,221,412 + IAI46_24455 0.53 +0.4
5,221,412 + IAI46_24455 0.53 -0.5
5,221,412 + IAI46_24455 0.53 +1.2
5,221,412 + IAI46_24455 0.53 -0.6
5,221,412 + IAI46_24455 0.53 +0.4
5,221,412 + IAI46_24455 0.53 +0.2
5,221,413 - IAI46_24455 0.53 +0.1
5,221,413 - IAI46_24455 0.53 +0.5
5,221,413 - IAI46_24455 0.53 +0.3
5,221,474 + IAI46_24455 0.59 -0.9
5,221,475 - IAI46_24455 0.59 +0.3
5,221,475 - IAI46_24455 0.59 -0.6
5,221,513 - IAI46_24455 0.62 +2.0
5,221,570 + IAI46_24455 0.68 +0.5
5,221,570 + IAI46_24455 0.68 +2.7
5,221,571 - IAI46_24455 0.68 +0.5
5,221,571 - IAI46_24455 0.68 -0.0
5,221,602 - IAI46_24455 0.71 +0.0
5,221,602 - IAI46_24455 0.71 +0.1
5,221,602 - IAI46_24455 0.71 +0.1
5,221,608 + IAI46_24455 0.71 -0.6
5,221,678 - IAI46_24455 0.77 +0.1
5,221,693 + IAI46_24455 0.79 +0.5
5,221,694 - IAI46_24455 0.79 +0.4
5,221,694 - IAI46_24455 0.79 +1.3
5,221,694 - IAI46_24455 0.79 -0.0
5,221,694 - IAI46_24455 0.79 +0.3
5,221,694 - IAI46_24455 0.79 +1.0
5,221,695 + IAI46_24455 0.79 +0.3
5,221,695 + IAI46_24455 0.79 +0.9
5,221,696 - IAI46_24455 0.79 -0.3
5,221,696 - IAI46_24455 0.79 +1.2
5,221,696 - IAI46_24455 0.79 +0.0
5,221,752 - IAI46_24455 0.84 -0.4
5,221,768 + IAI46_24455 0.86 +0.7
5,221,783 + IAI46_24455 0.87 -0.9
5,221,784 - IAI46_24455 0.87 -0.9
5,221,785 + IAI46_24455 0.87 +0.7
5,221,785 + IAI46_24455 0.87 -0.5
5,221,785 + IAI46_24455 0.87 +0.1
5,221,785 + IAI46_24455 0.87 +0.6
5,221,786 - IAI46_24455 0.87 +1.4
5,221,786 - IAI46_24455 0.87 +0.2
5,221,879 + +0.4
5,221,880 - +0.4
5,221,904 + -0.6
5,221,904 + +0.3
5,221,904 + -1.5
5,221,980 + -0.3
5,221,980 + +2.4
5,221,981 - +0.2
5,221,981 - +0.9
5,222,046 + IAI46_24460 0.21 +0.2
5,222,047 - IAI46_24460 0.21 +0.1
5,222,064 + IAI46_24460 0.26 -1.4
5,222,065 - IAI46_24460 0.26 -0.3
5,222,065 - IAI46_24460 0.26 +0.9
5,222,065 - IAI46_24460 0.26 -0.0
5,222,105 + IAI46_24460 0.37 -0.5
5,222,106 - IAI46_24460 0.37 -0.2
5,222,106 - IAI46_24460 0.37 +1.0
5,222,106 - IAI46_24460 0.37 +0.3
5,222,106 - IAI46_24460 0.37 +0.6
5,222,145 + IAI46_24460 0.48 +0.4
5,222,145 + IAI46_24460 0.48 -0.5
5,222,146 - IAI46_24460 0.48 +0.3
5,222,146 - IAI46_24460 0.48 +0.7
5,222,146 - IAI46_24460 0.48 -0.6
5,222,149 + IAI46_24460 0.49 -0.0
5,222,149 + IAI46_24460 0.49 -0.2
5,222,149 + IAI46_24460 0.49 +0.1
5,222,149 + IAI46_24460 0.49 -0.1
5,222,150 - IAI46_24460 0.49 +0.9
5,222,150 - IAI46_24460 0.49 -0.5
5,222,178 - IAI46_24460 0.57 -0.0
5,222,178 - IAI46_24460 0.57 -0.8
5,222,195 + IAI46_24460 0.61 -1.7
5,222,195 + IAI46_24460 0.61 -0.9
5,222,195 + IAI46_24460 0.61 -0.1
5,222,195 + IAI46_24460 0.61 -0.4
5,222,196 - IAI46_24460 0.62 +0.7
5,222,196 - IAI46_24460 0.62 +0.9
5,222,196 - IAI46_24460 0.62 +0.9
5,222,305 + -0.2
5,222,306 - +0.3
5,222,306 - -0.7
5,222,306 - +0.2
5,222,306 - +0.8
5,222,306 - +0.5
5,222,346 - -0.1
5,222,356 - -0.4
5,222,356 - -0.2
5,222,364 + +0.6
5,222,365 - +0.5
5,222,398 + +0.2
5,222,402 - +1.0
5,222,516 + IAI46_24465 0.26 +2.4
5,222,516 + IAI46_24465 0.26 +1.8
5,222,516 + IAI46_24465 0.26 +1.4
5,222,516 + IAI46_24465 0.26 -0.4
5,222,517 - IAI46_24465 0.26 +1.3
5,222,517 - IAI46_24465 0.26 +2.9
5,222,517 - IAI46_24465 0.26 +1.3
5,222,553 - IAI46_24465 0.32 +0.9
5,222,572 + IAI46_24465 0.35 +1.5

Or see this region's nucleotide sequence