Strain Fitness in Serratia liquefaciens MT49 around IAI46_24360

Experiment: Cobalt chloride 60 uM, anaerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_24350 and IAI46_24355 are separated by 22 nucleotidesIAI46_24355 and IAI46_24360 overlap by 4 nucleotidesIAI46_24360 and IAI46_24365 are separated by 142 nucleotidesIAI46_24365 and IAI46_24370 are separated by 133 nucleotides IAI46_24350: IAI46_24350 - branched-chain-amino-acid transaminase, at 5,199,421 to 5,200,347 _24350 IAI46_24355: IAI46_24355 - acetolactate synthase 2 small subunit, at 5,200,370 to 5,200,627 _24355 IAI46_24360: IAI46_24360 - acetolactate synthase 2 catalytic subunit, at 5,200,624 to 5,202,270 _24360 IAI46_24365: IAI46_24365 - ilv operon leader peptide, at 5,202,413 to 5,202,511 _24365 IAI46_24370: IAI46_24370 - MFS transporter, at 5,202,645 to 5,203,877 _24370 Position (kb) 5200 5201 5202 5203Strain fitness (log2 ratio) -2 -1 0 1 2at 5199.688 kb on - strand, within IAI46_24350at 5199.778 kb on - strand, within IAI46_24350at 5199.778 kb on - strand, within IAI46_24350at 5199.779 kb on + strand, within IAI46_24350at 5199.779 kb on + strand, within IAI46_24350at 5199.779 kb on + strand, within IAI46_24350at 5199.780 kb on - strand, within IAI46_24350at 5199.780 kb on - strand, within IAI46_24350at 5199.857 kb on + strand, within IAI46_24350at 5199.858 kb on - strand, within IAI46_24350at 5199.861 kb on + strand, within IAI46_24350at 5199.861 kb on + strand, within IAI46_24350at 5199.861 kb on + strand, within IAI46_24350at 5199.862 kb on - strand, within IAI46_24350at 5199.891 kb on + strand, within IAI46_24350at 5199.891 kb on + strand, within IAI46_24350at 5199.891 kb on + strand, within IAI46_24350at 5199.963 kb on - strand, within IAI46_24350at 5200.063 kb on - strand, within IAI46_24350at 5200.063 kb on - strand, within IAI46_24350at 5200.063 kb on - strand, within IAI46_24350at 5200.064 kb on + strand, within IAI46_24350at 5200.064 kb on + strand, within IAI46_24350at 5200.064 kb on + strand, within IAI46_24350at 5200.064 kb on + strand, within IAI46_24350at 5200.065 kb on - strand, within IAI46_24350at 5200.086 kb on + strand, within IAI46_24350at 5200.095 kb on + strand, within IAI46_24350at 5200.095 kb on + strand, within IAI46_24350at 5200.179 kb on + strand, within IAI46_24350at 5200.179 kb on + strand, within IAI46_24350at 5200.179 kb on + strand, within IAI46_24350at 5200.179 kb on + strand, within IAI46_24350at 5200.180 kb on - strand, within IAI46_24350at 5200.180 kb on - strand, within IAI46_24350at 5200.213 kb on - strand, within IAI46_24350at 5200.223 kb on + strand, within IAI46_24350at 5200.223 kb on + strand, within IAI46_24350at 5200.224 kb on - strand, within IAI46_24350at 5200.224 kb on - strand, within IAI46_24350at 5200.256 kb on + strandat 5200.257 kb on - strandat 5200.328 kb on + strandat 5200.329 kb on - strandat 5200.379 kb on + strandat 5200.451 kb on + strand, within IAI46_24355at 5200.451 kb on + strand, within IAI46_24355at 5200.451 kb on + strand, within IAI46_24355at 5200.451 kb on + strand, within IAI46_24355at 5200.452 kb on - strand, within IAI46_24355at 5200.452 kb on - strand, within IAI46_24355at 5200.452 kb on - strand, within IAI46_24355at 5200.452 kb on - strand, within IAI46_24355at 5200.452 kb on - strand, within IAI46_24355at 5200.492 kb on + strand, within IAI46_24355at 5200.492 kb on + strand, within IAI46_24355at 5200.492 kb on + strand, within IAI46_24355at 5200.492 kb on + strand, within IAI46_24355at 5200.493 kb on - strand, within IAI46_24355at 5200.493 kb on - strand, within IAI46_24355at 5200.493 kb on - strand, within IAI46_24355at 5200.493 kb on - strand, within IAI46_24355at 5200.522 kb on + strand, within IAI46_24355at 5200.522 kb on + strand, within IAI46_24355at 5200.523 kb on - strand, within IAI46_24355at 5200.528 kb on + strand, within IAI46_24355at 5200.528 kb on + strand, within IAI46_24355at 5200.528 kb on + strand, within IAI46_24355at 5200.528 kb on + strand, within IAI46_24355at 5200.529 kb on - strand, within IAI46_24355at 5200.529 kb on - strand, within IAI46_24355at 5200.577 kb on + strand, within IAI46_24355at 5200.705 kb on + strandat 5200.706 kb on - strandat 5200.706 kb on - strandat 5200.718 kb on + strandat 5200.739 kb on - strandat 5200.739 kb on - strandat 5200.779 kb on + strandat 5200.779 kb on + strandat 5200.779 kb on + strandat 5200.780 kb on - strandat 5200.897 kb on + strand, within IAI46_24360at 5200.897 kb on + strand, within IAI46_24360at 5200.898 kb on - strand, within IAI46_24360at 5200.915 kb on + strand, within IAI46_24360at 5200.918 kb on + strand, within IAI46_24360at 5200.948 kb on + strand, within IAI46_24360at 5200.948 kb on + strand, within IAI46_24360at 5200.966 kb on + strand, within IAI46_24360at 5200.966 kb on + strand, within IAI46_24360at 5200.967 kb on - strand, within IAI46_24360at 5200.967 kb on - strand, within IAI46_24360at 5201.155 kb on - strand, within IAI46_24360at 5201.237 kb on + strand, within IAI46_24360at 5201.497 kb on + strand, within IAI46_24360at 5201.532 kb on + strand, within IAI46_24360at 5201.532 kb on + strand, within IAI46_24360at 5201.533 kb on - strand, within IAI46_24360at 5201.533 kb on - strand, within IAI46_24360at 5201.540 kb on + strand, within IAI46_24360at 5201.541 kb on - strand, within IAI46_24360at 5201.543 kb on + strand, within IAI46_24360at 5201.543 kb on + strand, within IAI46_24360at 5201.543 kb on + strand, within IAI46_24360at 5201.651 kb on - strand, within IAI46_24360at 5201.666 kb on + strand, within IAI46_24360at 5201.666 kb on + strand, within IAI46_24360at 5201.666 kb on + strand, within IAI46_24360at 5201.666 kb on + strand, within IAI46_24360at 5201.667 kb on - strand, within IAI46_24360at 5201.667 kb on - strand, within IAI46_24360at 5201.667 kb on - strand, within IAI46_24360at 5201.667 kb on - strand, within IAI46_24360at 5201.668 kb on + strand, within IAI46_24360at 5201.668 kb on + strand, within IAI46_24360at 5201.669 kb on - strand, within IAI46_24360at 5201.669 kb on - strand, within IAI46_24360at 5201.669 kb on - strand, within IAI46_24360at 5201.669 kb on - strand, within IAI46_24360at 5202.101 kb on + strand, within IAI46_24360at 5202.145 kb on + strandat 5202.145 kb on + strandat 5202.145 kb on + strandat 5202.146 kb on - strandat 5202.146 kb on - strandat 5202.146 kb on - strandat 5202.146 kb on - strandat 5202.146 kb on - strandat 5202.154 kb on + strandat 5202.155 kb on - strandat 5202.167 kb on + strandat 5202.167 kb on + strandat 5202.167 kb on + strandat 5202.167 kb on + strandat 5202.167 kb on + strandat 5202.167 kb on + strandat 5202.168 kb on - strandat 5202.168 kb on - strandat 5202.168 kb on - strandat 5202.168 kb on - strandat 5202.179 kb on + strandat 5202.180 kb on - strandat 5202.214 kb on + strandat 5202.215 kb on - strandat 5202.219 kb on + strandat 5202.219 kb on + strandat 5202.219 kb on + strandat 5202.220 kb on - strandat 5202.247 kb on + strandat 5202.248 kb on - strandat 5202.248 kb on - strandat 5202.248 kb on - strandat 5202.248 kb on - strandat 5202.270 kb on + strandat 5202.271 kb on - strandat 5202.271 kb on - strandat 5202.271 kb on - strandat 5202.274 kb on + strandat 5202.274 kb on + strandat 5202.275 kb on - strandat 5202.288 kb on - strandat 5202.324 kb on - strandat 5202.414 kb on + strandat 5202.454 kb on + strand, within IAI46_24365at 5202.457 kb on + strand, within IAI46_24365at 5202.457 kb on + strand, within IAI46_24365at 5202.457 kb on + strand, within IAI46_24365at 5202.457 kb on + strand, within IAI46_24365at 5202.458 kb on - strand, within IAI46_24365at 5202.458 kb on - strand, within IAI46_24365at 5202.458 kb on - strand, within IAI46_24365at 5202.473 kb on - strand, within IAI46_24365at 5202.482 kb on + strand, within IAI46_24365at 5202.487 kb on + strand, within IAI46_24365at 5202.488 kb on - strand, within IAI46_24365at 5202.512 kb on - strandat 5202.512 kb on - strandat 5202.544 kb on - strandat 5202.551 kb on - strandat 5202.622 kb on - strandat 5202.778 kb on + strand, within IAI46_24370at 5202.779 kb on - strand, within IAI46_24370at 5202.782 kb on + strand, within IAI46_24370at 5202.783 kb on - strand, within IAI46_24370at 5202.783 kb on - strand, within IAI46_24370at 5202.843 kb on - strand, within IAI46_24370at 5202.902 kb on + strand, within IAI46_24370at 5202.907 kb on + strand, within IAI46_24370at 5203.116 kb on - strand, within IAI46_24370at 5203.116 kb on - strand, within IAI46_24370at 5203.128 kb on - strand, within IAI46_24370at 5203.177 kb on + strand, within IAI46_24370at 5203.181 kb on + strand, within IAI46_24370at 5203.181 kb on + strand, within IAI46_24370at 5203.181 kb on + strand, within IAI46_24370at 5203.182 kb on - strand, within IAI46_24370

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 60 uM, anaerobic
remove
5,199,688 - IAI46_24350 0.29 -0.5
5,199,778 - IAI46_24350 0.39 -0.1
5,199,778 - IAI46_24350 0.39 -1.8
5,199,779 + IAI46_24350 0.39 -0.4
5,199,779 + IAI46_24350 0.39 +0.2
5,199,779 + IAI46_24350 0.39 +0.4
5,199,780 - IAI46_24350 0.39 -0.3
5,199,780 - IAI46_24350 0.39 +0.2
5,199,857 + IAI46_24350 0.47 +0.5
5,199,858 - IAI46_24350 0.47 +0.6
5,199,861 + IAI46_24350 0.47 +0.1
5,199,861 + IAI46_24350 0.47 -0.4
5,199,861 + IAI46_24350 0.47 -0.6
5,199,862 - IAI46_24350 0.48 -0.8
5,199,891 + IAI46_24350 0.51 +2.2
5,199,891 + IAI46_24350 0.51 -0.6
5,199,891 + IAI46_24350 0.51 -0.7
5,199,963 - IAI46_24350 0.58 +0.3
5,200,063 - IAI46_24350 0.69 +1.0
5,200,063 - IAI46_24350 0.69 -0.2
5,200,063 - IAI46_24350 0.69 +0.0
5,200,064 + IAI46_24350 0.69 -0.3
5,200,064 + IAI46_24350 0.69 +0.8
5,200,064 + IAI46_24350 0.69 +0.1
5,200,064 + IAI46_24350 0.69 +0.0
5,200,065 - IAI46_24350 0.69 +0.6
5,200,086 + IAI46_24350 0.72 +0.0
5,200,095 + IAI46_24350 0.73 +0.5
5,200,095 + IAI46_24350 0.73 +0.3
5,200,179 + IAI46_24350 0.82 -0.3
5,200,179 + IAI46_24350 0.82 -1.5
5,200,179 + IAI46_24350 0.82 -0.2
5,200,179 + IAI46_24350 0.82 +0.3
5,200,180 - IAI46_24350 0.82 +0.3
5,200,180 - IAI46_24350 0.82 -0.8
5,200,213 - IAI46_24350 0.85 +0.0
5,200,223 + IAI46_24350 0.87 +0.1
5,200,223 + IAI46_24350 0.87 +0.2
5,200,224 - IAI46_24350 0.87 -0.4
5,200,224 - IAI46_24350 0.87 +0.3
5,200,256 + -0.1
5,200,257 - -0.0
5,200,328 + -0.9
5,200,329 - +0.5
5,200,379 + +0.1
5,200,451 + IAI46_24355 0.31 -0.0
5,200,451 + IAI46_24355 0.31 +0.4
5,200,451 + IAI46_24355 0.31 +0.3
5,200,451 + IAI46_24355 0.31 +0.6
5,200,452 - IAI46_24355 0.32 -0.2
5,200,452 - IAI46_24355 0.32 +0.9
5,200,452 - IAI46_24355 0.32 +0.1
5,200,452 - IAI46_24355 0.32 -0.2
5,200,452 - IAI46_24355 0.32 -0.2
5,200,492 + IAI46_24355 0.47 +1.1
5,200,492 + IAI46_24355 0.47 +0.3
5,200,492 + IAI46_24355 0.47 +0.5
5,200,492 + IAI46_24355 0.47 -0.3
5,200,493 - IAI46_24355 0.48 +0.5
5,200,493 - IAI46_24355 0.48 +0.7
5,200,493 - IAI46_24355 0.48 +0.8
5,200,493 - IAI46_24355 0.48 +0.2
5,200,522 + IAI46_24355 0.59 -0.2
5,200,522 + IAI46_24355 0.59 -0.1
5,200,523 - IAI46_24355 0.59 -0.0
5,200,528 + IAI46_24355 0.61 -0.3
5,200,528 + IAI46_24355 0.61 -0.5
5,200,528 + IAI46_24355 0.61 -0.1
5,200,528 + IAI46_24355 0.61 -0.0
5,200,529 - IAI46_24355 0.62 +0.6
5,200,529 - IAI46_24355 0.62 +0.1
5,200,577 + IAI46_24355 0.80 -0.2
5,200,705 + +0.7
5,200,706 - +0.2
5,200,706 - -0.5
5,200,718 + -0.1
5,200,739 - -0.4
5,200,739 - -0.2
5,200,779 + -0.3
5,200,779 + +0.3
5,200,779 + -0.2
5,200,780 - +0.2
5,200,897 + IAI46_24360 0.17 +0.6
5,200,897 + IAI46_24360 0.17 +0.7
5,200,898 - IAI46_24360 0.17 +0.1
5,200,915 + IAI46_24360 0.18 +0.8
5,200,918 + IAI46_24360 0.18 -0.4
5,200,948 + IAI46_24360 0.20 +0.1
5,200,948 + IAI46_24360 0.20 -0.3
5,200,966 + IAI46_24360 0.21 +0.6
5,200,966 + IAI46_24360 0.21 -0.3
5,200,967 - IAI46_24360 0.21 +0.0
5,200,967 - IAI46_24360 0.21 +0.3
5,201,155 - IAI46_24360 0.32 +0.4
5,201,237 + IAI46_24360 0.37 +0.2
5,201,497 + IAI46_24360 0.53 +0.1
5,201,532 + IAI46_24360 0.55 +0.1
5,201,532 + IAI46_24360 0.55 +0.3
5,201,533 - IAI46_24360 0.55 -0.6
5,201,533 - IAI46_24360 0.55 +0.9
5,201,540 + IAI46_24360 0.56 +0.3
5,201,541 - IAI46_24360 0.56 -0.3
5,201,543 + IAI46_24360 0.56 +0.1
5,201,543 + IAI46_24360 0.56 +0.4
5,201,543 + IAI46_24360 0.56 -0.3
5,201,651 - IAI46_24360 0.62 -0.1
5,201,666 + IAI46_24360 0.63 +0.4
5,201,666 + IAI46_24360 0.63 +0.7
5,201,666 + IAI46_24360 0.63 -0.6
5,201,666 + IAI46_24360 0.63 +0.7
5,201,667 - IAI46_24360 0.63 -0.1
5,201,667 - IAI46_24360 0.63 +0.1
5,201,667 - IAI46_24360 0.63 +0.1
5,201,667 - IAI46_24360 0.63 +0.2
5,201,668 + IAI46_24360 0.63 +0.5
5,201,668 + IAI46_24360 0.63 +0.5
5,201,669 - IAI46_24360 0.63 +0.1
5,201,669 - IAI46_24360 0.63 -0.3
5,201,669 - IAI46_24360 0.63 -0.0
5,201,669 - IAI46_24360 0.63 +0.3
5,202,101 + IAI46_24360 0.90 +0.6
5,202,145 + -0.1
5,202,145 + -0.0
5,202,145 + -0.3
5,202,146 - -0.3
5,202,146 - +1.3
5,202,146 - +1.2
5,202,146 - -0.4
5,202,146 - +0.0
5,202,154 + +0.4
5,202,155 - +0.6
5,202,167 + +0.5
5,202,167 + +0.5
5,202,167 + +0.7
5,202,167 + +0.3
5,202,167 + +0.4
5,202,167 + -0.4
5,202,168 - -0.8
5,202,168 - -0.2
5,202,168 - -0.3
5,202,168 - +0.8
5,202,179 + -0.1
5,202,180 - -0.6
5,202,214 + +0.0
5,202,215 - +0.3
5,202,219 + +0.9
5,202,219 + +0.5
5,202,219 + -0.5
5,202,220 - -0.1
5,202,247 + +0.4
5,202,248 - +0.1
5,202,248 - -0.1
5,202,248 - +0.5
5,202,248 - -0.2
5,202,270 + -0.4
5,202,271 - +0.6
5,202,271 - +0.2
5,202,271 - -1.0
5,202,274 + -0.1
5,202,274 + +0.8
5,202,275 - +1.0
5,202,288 - -0.6
5,202,324 - -0.2
5,202,414 + -0.7
5,202,454 + IAI46_24365 0.41 -1.0
5,202,457 + IAI46_24365 0.44 +0.0
5,202,457 + IAI46_24365 0.44 -0.1
5,202,457 + IAI46_24365 0.44 -0.5
5,202,457 + IAI46_24365 0.44 -0.1
5,202,458 - IAI46_24365 0.45 -0.2
5,202,458 - IAI46_24365 0.45 -0.5
5,202,458 - IAI46_24365 0.45 +0.8
5,202,473 - IAI46_24365 0.61 +0.1
5,202,482 + IAI46_24365 0.70 -0.4
5,202,487 + IAI46_24365 0.75 +0.0
5,202,488 - IAI46_24365 0.76 -0.9
5,202,512 - -0.1
5,202,512 - +0.2
5,202,544 - -0.6
5,202,551 - +0.6
5,202,622 - -0.2
5,202,778 + IAI46_24370 0.11 +0.3
5,202,779 - IAI46_24370 0.11 -1.4
5,202,782 + IAI46_24370 0.11 -0.5
5,202,783 - IAI46_24370 0.11 -0.6
5,202,783 - IAI46_24370 0.11 +0.6
5,202,843 - IAI46_24370 0.16 -0.1
5,202,902 + IAI46_24370 0.21 -0.3
5,202,907 + IAI46_24370 0.21 +0.0
5,203,116 - IAI46_24370 0.38 +0.2
5,203,116 - IAI46_24370 0.38 +0.2
5,203,128 - IAI46_24370 0.39 -0.1
5,203,177 + IAI46_24370 0.43 -0.2
5,203,181 + IAI46_24370 0.43 +0.1
5,203,181 + IAI46_24370 0.43 +0.1
5,203,181 + IAI46_24370 0.43 -0.2
5,203,182 - IAI46_24370 0.44 -0.4

Or see this region's nucleotide sequence