Experiment: Cobalt chloride 60 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_24220 and IAI46_24225 are separated by 109 nucleotides IAI46_24225 and IAI46_24230 overlap by 9 nucleotides IAI46_24230 and IAI46_24235 are separated by 135 nucleotides
IAI46_24220: IAI46_24220 - amidase, at 5,163,780 to 5,165,222
_24220
IAI46_24225: IAI46_24225 - LysR family transcriptional regulator, at 5,165,332 to 5,166,249
_24225
IAI46_24230: IAI46_24230 - ASCH domain-containing protein, at 5,166,241 to 5,166,648
_24230
IAI46_24235: IAI46_24235 - 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ, at 5,166,784 to 5,167,626
_24235
Position (kb) 5165
5166
5167 Strain fitness (log2 ratio) -2
-1
0
1 at 5164.466 kb on + strand, within IAI46_24220 at 5164.528 kb on + strand, within IAI46_24220 at 5164.529 kb on - strand, within IAI46_24220 at 5164.531 kb on + strand, within IAI46_24220 at 5164.532 kb on - strand, within IAI46_24220 at 5164.557 kb on + strand, within IAI46_24220 at 5164.557 kb on + strand, within IAI46_24220 at 5164.557 kb on + strand, within IAI46_24220 at 5164.557 kb on + strand, within IAI46_24220 at 5164.557 kb on + strand, within IAI46_24220 at 5164.558 kb on - strand, within IAI46_24220 at 5164.558 kb on - strand, within IAI46_24220 at 5164.656 kb on + strand, within IAI46_24220 at 5164.677 kb on - strand, within IAI46_24220 at 5164.677 kb on - strand, within IAI46_24220 at 5164.715 kb on + strand, within IAI46_24220 at 5164.746 kb on - strand, within IAI46_24220 at 5164.830 kb on - strand, within IAI46_24220 at 5164.837 kb on + strand, within IAI46_24220 at 5164.919 kb on + strand, within IAI46_24220 at 5164.919 kb on + strand, within IAI46_24220 at 5164.919 kb on + strand, within IAI46_24220 at 5164.919 kb on + strand, within IAI46_24220 at 5164.920 kb on - strand, within IAI46_24220 at 5164.920 kb on - strand, within IAI46_24220 at 5164.933 kb on + strand, within IAI46_24220 at 5164.933 kb on + strand, within IAI46_24220 at 5164.934 kb on - strand, within IAI46_24220 at 5164.934 kb on - strand, within IAI46_24220 at 5164.934 kb on - strand, within IAI46_24220 at 5165.169 kb on + strand at 5165.169 kb on + strand at 5165.170 kb on - strand at 5165.197 kb on + strand at 5165.197 kb on + strand at 5165.198 kb on - strand at 5165.201 kb on + strand at 5165.201 kb on + strand at 5165.206 kb on + strand at 5165.206 kb on + strand at 5165.206 kb on + strand at 5165.207 kb on - strand at 5165.207 kb on - strand at 5165.279 kb on + strand at 5165.280 kb on - strand at 5165.280 kb on - strand at 5165.294 kb on + strand at 5165.295 kb on - strand at 5165.297 kb on - strand at 5165.297 kb on - strand at 5165.315 kb on + strand at 5165.315 kb on + strand at 5165.315 kb on + strand at 5165.315 kb on + strand at 5165.318 kb on + strand at 5165.327 kb on + strand at 5165.328 kb on - strand at 5165.331 kb on + strand at 5165.332 kb on - strand at 5165.332 kb on - strand at 5165.342 kb on + strand at 5165.476 kb on + strand, within IAI46_24225 at 5165.477 kb on - strand, within IAI46_24225 at 5165.659 kb on + strand, within IAI46_24225 at 5165.660 kb on - strand, within IAI46_24225 at 5165.660 kb on - strand, within IAI46_24225 at 5165.845 kb on + strand, within IAI46_24225 at 5166.002 kb on + strand, within IAI46_24225 at 5166.002 kb on + strand, within IAI46_24225 at 5166.003 kb on - strand, within IAI46_24225 at 5166.003 kb on - strand, within IAI46_24225 at 5166.003 kb on - strand, within IAI46_24225 at 5166.135 kb on - strand, within IAI46_24225 at 5166.142 kb on + strand, within IAI46_24225 at 5166.142 kb on + strand, within IAI46_24225 at 5166.152 kb on + strand, within IAI46_24225 at 5166.152 kb on + strand, within IAI46_24225 at 5166.152 kb on + strand, within IAI46_24225 at 5166.152 kb on + strand, within IAI46_24225 at 5166.152 kb on + strand, within IAI46_24225 at 5166.152 kb on + strand, within IAI46_24225 at 5166.153 kb on - strand, within IAI46_24225 at 5166.153 kb on - strand, within IAI46_24225 at 5166.153 kb on - strand, within IAI46_24225 at 5166.247 kb on + strand at 5166.248 kb on - strand at 5166.248 kb on - strand at 5166.476 kb on + strand, within IAI46_24230 at 5166.476 kb on + strand, within IAI46_24230 at 5166.477 kb on - strand, within IAI46_24230 at 5166.519 kb on - strand, within IAI46_24230 at 5166.519 kb on - strand, within IAI46_24230 at 5166.519 kb on - strand, within IAI46_24230 at 5166.519 kb on - strand, within IAI46_24230 at 5166.620 kb on + strand at 5166.620 kb on + strand at 5166.620 kb on + strand at 5166.620 kb on + strand at 5166.621 kb on - strand at 5166.621 kb on - strand at 5166.621 kb on - strand at 5166.624 kb on + strand at 5166.625 kb on - strand at 5166.642 kb on + strand at 5166.642 kb on + strand at 5166.643 kb on - strand at 5166.711 kb on + strand at 5166.712 kb on - strand at 5166.712 kb on - strand at 5166.713 kb on + strand at 5166.713 kb on + strand at 5166.713 kb on + strand at 5166.713 kb on + strand at 5166.713 kb on + strand at 5166.714 kb on - strand at 5166.714 kb on - strand at 5166.714 kb on - strand at 5166.714 kb on - strand at 5166.725 kb on + strand at 5166.725 kb on + strand at 5166.726 kb on - strand at 5166.728 kb on - strand at 5166.736 kb on - strand at 5166.736 kb on - strand at 5166.736 kb on - strand at 5166.788 kb on + strand at 5166.788 kb on + strand at 5166.788 kb on + strand at 5166.788 kb on + strand at 5166.789 kb on - strand at 5166.789 kb on - strand at 5166.789 kb on - strand at 5166.789 kb on - strand at 5166.834 kb on + strand at 5166.834 kb on + strand at 5166.834 kb on + strand at 5166.834 kb on + strand at 5166.835 kb on - strand at 5166.835 kb on - strand at 5166.835 kb on - strand at 5166.895 kb on + strand, within IAI46_24235 at 5167.024 kb on + strand, within IAI46_24235 at 5167.024 kb on + strand, within IAI46_24235 at 5167.024 kb on + strand, within IAI46_24235 at 5167.025 kb on - strand, within IAI46_24235 at 5167.025 kb on - strand, within IAI46_24235 at 5167.025 kb on - strand, within IAI46_24235 at 5167.034 kb on + strand, within IAI46_24235 at 5167.034 kb on + strand, within IAI46_24235 at 5167.035 kb on - strand, within IAI46_24235 at 5167.035 kb on - strand, within IAI46_24235 at 5167.035 kb on - strand, within IAI46_24235 at 5167.035 kb on - strand, within IAI46_24235 at 5167.035 kb on - strand, within IAI46_24235 at 5167.048 kb on - strand, within IAI46_24235 at 5167.069 kb on + strand, within IAI46_24235 at 5167.069 kb on + strand, within IAI46_24235 at 5167.069 kb on + strand, within IAI46_24235 at 5167.069 kb on + strand, within IAI46_24235 at 5167.070 kb on - strand, within IAI46_24235 at 5167.070 kb on - strand, within IAI46_24235 at 5167.070 kb on - strand, within IAI46_24235 at 5167.072 kb on + strand, within IAI46_24235 at 5167.073 kb on - strand, within IAI46_24235 at 5167.216 kb on + strand, within IAI46_24235 at 5167.217 kb on - strand, within IAI46_24235
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 60 uM, anaerobic remove 5,164,466 + IAI46_24220 0.48 -0.9 5,164,528 + IAI46_24220 0.52 -0.0 5,164,529 - IAI46_24220 0.52 +0.3 5,164,531 + IAI46_24220 0.52 -0.2 5,164,532 - IAI46_24220 0.52 +0.2 5,164,557 + IAI46_24220 0.54 +0.5 5,164,557 + IAI46_24220 0.54 +0.3 5,164,557 + IAI46_24220 0.54 -1.0 5,164,557 + IAI46_24220 0.54 -1.1 5,164,557 + IAI46_24220 0.54 -0.5 5,164,558 - IAI46_24220 0.54 +1.4 5,164,558 - IAI46_24220 0.54 +0.5 5,164,656 + IAI46_24220 0.61 +0.2 5,164,677 - IAI46_24220 0.62 +1.5 5,164,677 - IAI46_24220 0.62 -0.5 5,164,715 + IAI46_24220 0.65 +0.6 5,164,746 - IAI46_24220 0.67 -0.5 5,164,830 - IAI46_24220 0.73 -0.5 5,164,837 + IAI46_24220 0.73 -0.6 5,164,919 + IAI46_24220 0.79 +0.1 5,164,919 + IAI46_24220 0.79 +0.1 5,164,919 + IAI46_24220 0.79 +0.7 5,164,919 + IAI46_24220 0.79 +0.7 5,164,920 - IAI46_24220 0.79 +0.5 5,164,920 - IAI46_24220 0.79 -0.0 5,164,933 + IAI46_24220 0.80 +1.1 5,164,933 + IAI46_24220 0.80 +0.1 5,164,934 - IAI46_24220 0.80 -1.0 5,164,934 - IAI46_24220 0.80 -0.5 5,164,934 - IAI46_24220 0.80 -0.4 5,165,169 + +0.7 5,165,169 + -1.7 5,165,170 - +0.6 5,165,197 + +0.2 5,165,197 + +0.2 5,165,198 - +0.6 5,165,201 + +0.3 5,165,201 + -1.7 5,165,206 + -0.2 5,165,206 + +1.4 5,165,206 + -1.8 5,165,207 - -0.4 5,165,207 - -0.1 5,165,279 + +0.3 5,165,280 - +0.4 5,165,280 - +0.5 5,165,294 + +0.7 5,165,295 - -0.5 5,165,297 - +0.3 5,165,297 - +0.1 5,165,315 + +0.2 5,165,315 + +0.4 5,165,315 + -0.0 5,165,315 + +0.3 5,165,318 + +0.6 5,165,327 + +0.1 5,165,328 - +0.4 5,165,331 + +0.2 5,165,332 - +0.5 5,165,332 - +0.2 5,165,342 + +1.2 5,165,476 + IAI46_24225 0.16 +0.5 5,165,477 - IAI46_24225 0.16 -0.0 5,165,659 + IAI46_24225 0.36 +0.2 5,165,660 - IAI46_24225 0.36 +0.5 5,165,660 - IAI46_24225 0.36 -0.0 5,165,845 + IAI46_24225 0.56 +0.3 5,166,002 + IAI46_24225 0.73 -0.0 5,166,002 + IAI46_24225 0.73 +0.4 5,166,003 - IAI46_24225 0.73 -0.7 5,166,003 - IAI46_24225 0.73 -0.4 5,166,003 - IAI46_24225 0.73 +0.6 5,166,135 - IAI46_24225 0.87 -0.1 5,166,142 + IAI46_24225 0.88 +0.5 5,166,142 + IAI46_24225 0.88 -0.7 5,166,152 + IAI46_24225 0.89 -0.6 5,166,152 + IAI46_24225 0.89 +0.0 5,166,152 + IAI46_24225 0.89 +0.8 5,166,152 + IAI46_24225 0.89 -0.2 5,166,152 + IAI46_24225 0.89 -0.9 5,166,152 + IAI46_24225 0.89 +0.2 5,166,153 - IAI46_24225 0.89 -0.1 5,166,153 - IAI46_24225 0.89 +0.1 5,166,153 - IAI46_24225 0.89 -0.9 5,166,247 + +0.1 5,166,248 - +0.4 5,166,248 - -0.2 5,166,476 + IAI46_24230 0.58 -0.8 5,166,476 + IAI46_24230 0.58 -0.1 5,166,477 - IAI46_24230 0.58 -0.6 5,166,519 - IAI46_24230 0.68 +0.2 5,166,519 - IAI46_24230 0.68 -0.1 5,166,519 - IAI46_24230 0.68 +0.6 5,166,519 - IAI46_24230 0.68 +0.6 5,166,620 + +0.3 5,166,620 + +0.1 5,166,620 + +0.4 5,166,620 + +0.0 5,166,621 - +0.6 5,166,621 - -0.1 5,166,621 - +0.1 5,166,624 + +0.5 5,166,625 - -0.2 5,166,642 + -0.2 5,166,642 + +0.2 5,166,643 - +0.5 5,166,711 + -0.0 5,166,712 - +0.3 5,166,712 - +0.3 5,166,713 + -0.8 5,166,713 + +0.7 5,166,713 + +0.2 5,166,713 + -0.7 5,166,713 + +0.3 5,166,714 - +0.2 5,166,714 - +0.4 5,166,714 - +0.3 5,166,714 - +0.6 5,166,725 + +0.3 5,166,725 + -0.1 5,166,726 - -0.9 5,166,728 - -0.5 5,166,736 - -2.3 5,166,736 - -0.1 5,166,736 - -0.0 5,166,788 + +0.1 5,166,788 + +0.2 5,166,788 + +0.1 5,166,788 + +0.3 5,166,789 - -1.3 5,166,789 - +0.1 5,166,789 - +0.7 5,166,789 - +0.0 5,166,834 + +1.5 5,166,834 + +0.5 5,166,834 + +0.3 5,166,834 + -0.3 5,166,835 - +1.1 5,166,835 - -0.3 5,166,835 - +0.3 5,166,895 + IAI46_24235 0.13 +0.0 5,167,024 + IAI46_24235 0.28 +0.2 5,167,024 + IAI46_24235 0.28 +0.3 5,167,024 + IAI46_24235 0.28 -0.1 5,167,025 - IAI46_24235 0.29 -0.6 5,167,025 - IAI46_24235 0.29 -0.7 5,167,025 - IAI46_24235 0.29 -0.5 5,167,034 + IAI46_24235 0.30 +0.3 5,167,034 + IAI46_24235 0.30 +0.1 5,167,035 - IAI46_24235 0.30 -0.7 5,167,035 - IAI46_24235 0.30 +0.3 5,167,035 - IAI46_24235 0.30 -0.3 5,167,035 - IAI46_24235 0.30 -0.7 5,167,035 - IAI46_24235 0.30 -1.6 5,167,048 - IAI46_24235 0.31 +0.5 5,167,069 + IAI46_24235 0.34 -0.1 5,167,069 + IAI46_24235 0.34 +0.3 5,167,069 + IAI46_24235 0.34 -0.1 5,167,069 + IAI46_24235 0.34 -0.0 5,167,070 - IAI46_24235 0.34 -0.7 5,167,070 - IAI46_24235 0.34 +0.7 5,167,070 - IAI46_24235 0.34 -0.7 5,167,072 + IAI46_24235 0.34 -1.0 5,167,073 - IAI46_24235 0.34 -0.1 5,167,216 + IAI46_24235 0.51 +0.1 5,167,217 - IAI46_24235 0.51 -0.8
Or see this region's nucleotide sequence