Experiment: Cobalt chloride 60 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_23715 and IAI46_23720 overlap by 4 nucleotides IAI46_23720 and IAI46_23725 overlap by 8 nucleotides IAI46_23725 and IAI46_23730 overlap by 8 nucleotides IAI46_23730 and IAI46_23735 are separated by 3 nucleotides IAI46_23735 and IAI46_23740 are separated by 122 nucleotides
IAI46_23715: IAI46_23715 - DNA uptake porin HofQ, at 5,042,973 to 5,044,214
_23715
IAI46_23720: IAI46_23720 - DUF2531 family protein, at 5,044,211 to 5,044,567
_23720
IAI46_23725: IAI46_23725 - hypothetical protein, at 5,044,560 to 5,045,078
_23725
IAI46_23730: IAI46_23730 - PilN domain-containing protein, at 5,045,071 to 5,045,607
_23730
IAI46_23735: IAI46_23735 - pilus assembly protein PilM, at 5,045,611 to 5,046,453
_23735
IAI46_23740: IAI46_23740 - peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA, at 5,046,576 to 5,049,134
_23740
Position (kb) 5045
5046 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5044.101 kb on + strand at 5044.101 kb on + strand at 5044.101 kb on + strand at 5044.158 kb on + strand at 5044.158 kb on + strand at 5044.158 kb on + strand at 5044.159 kb on - strand at 5044.159 kb on - strand at 5044.159 kb on - strand at 5044.159 kb on - strand at 5044.159 kb on - strand at 5044.225 kb on + strand at 5044.226 kb on - strand at 5044.226 kb on - strand at 5044.252 kb on + strand, within IAI46_23720 at 5044.252 kb on + strand, within IAI46_23720 at 5044.252 kb on + strand, within IAI46_23720 at 5044.252 kb on + strand, within IAI46_23720 at 5044.253 kb on - strand, within IAI46_23720 at 5044.280 kb on - strand, within IAI46_23720 at 5044.295 kb on + strand, within IAI46_23720 at 5044.316 kb on + strand, within IAI46_23720 at 5044.317 kb on - strand, within IAI46_23720 at 5044.390 kb on + strand, within IAI46_23720 at 5044.391 kb on - strand, within IAI46_23720 at 5044.391 kb on - strand, within IAI46_23720 at 5044.391 kb on - strand, within IAI46_23720 at 5044.391 kb on - strand, within IAI46_23720 at 5044.394 kb on + strand, within IAI46_23720 at 5044.394 kb on + strand, within IAI46_23720 at 5044.394 kb on + strand, within IAI46_23720 at 5044.394 kb on + strand, within IAI46_23720 at 5044.567 kb on + strand at 5044.567 kb on + strand at 5044.567 kb on + strand at 5044.568 kb on - strand at 5044.568 kb on - strand at 5044.568 kb on - strand at 5044.692 kb on + strand, within IAI46_23725 at 5044.693 kb on - strand, within IAI46_23725 at 5044.695 kb on + strand, within IAI46_23725 at 5044.695 kb on + strand, within IAI46_23725 at 5044.695 kb on + strand, within IAI46_23725 at 5044.695 kb on + strand, within IAI46_23725 at 5044.696 kb on - strand, within IAI46_23725 at 5044.696 kb on - strand, within IAI46_23725 at 5044.705 kb on + strand, within IAI46_23725 at 5044.788 kb on + strand, within IAI46_23725 at 5044.788 kb on + strand, within IAI46_23725 at 5044.788 kb on + strand, within IAI46_23725 at 5044.788 kb on + strand, within IAI46_23725 at 5044.789 kb on - strand, within IAI46_23725 at 5044.809 kb on - strand, within IAI46_23725 at 5044.826 kb on + strand, within IAI46_23725 at 5044.826 kb on + strand, within IAI46_23725 at 5044.827 kb on - strand, within IAI46_23725 at 5045.072 kb on + strand at 5045.072 kb on + strand at 5045.072 kb on + strand at 5045.072 kb on + strand at 5045.073 kb on - strand at 5045.073 kb on - strand at 5045.073 kb on - strand at 5045.073 kb on - strand at 5045.103 kb on + strand at 5045.104 kb on - strand at 5045.104 kb on - strand at 5045.104 kb on - strand at 5045.176 kb on + strand, within IAI46_23730 at 5045.176 kb on + strand, within IAI46_23730 at 5045.207 kb on + strand, within IAI46_23730 at 5045.208 kb on - strand, within IAI46_23730 at 5045.236 kb on - strand, within IAI46_23730 at 5045.247 kb on + strand, within IAI46_23730 at 5045.248 kb on - strand, within IAI46_23730 at 5045.250 kb on + strand, within IAI46_23730 at 5045.251 kb on - strand, within IAI46_23730 at 5045.251 kb on - strand, within IAI46_23730 at 5045.251 kb on - strand, within IAI46_23730 at 5045.251 kb on - strand, within IAI46_23730 at 5045.365 kb on + strand, within IAI46_23730 at 5045.604 kb on - strand at 5045.667 kb on + strand at 5045.667 kb on + strand at 5045.668 kb on - strand at 5045.668 kb on - strand at 5045.694 kb on + strand at 5045.704 kb on - strand, within IAI46_23735 at 5045.757 kb on + strand, within IAI46_23735 at 5045.760 kb on - strand, within IAI46_23735 at 5045.760 kb on - strand, within IAI46_23735 at 5045.763 kb on - strand, within IAI46_23735 at 5045.763 kb on - strand, within IAI46_23735 at 5045.776 kb on - strand, within IAI46_23735 at 5045.776 kb on - strand, within IAI46_23735 at 5045.868 kb on + strand, within IAI46_23735 at 5045.869 kb on - strand, within IAI46_23735 at 5045.888 kb on - strand, within IAI46_23735 at 5045.973 kb on + strand, within IAI46_23735 at 5045.973 kb on + strand, within IAI46_23735 at 5045.974 kb on - strand, within IAI46_23735 at 5045.974 kb on - strand, within IAI46_23735 at 5045.976 kb on + strand, within IAI46_23735 at 5045.984 kb on - strand, within IAI46_23735 at 5046.008 kb on + strand, within IAI46_23735 at 5046.009 kb on - strand, within IAI46_23735 at 5046.133 kb on + strand, within IAI46_23735 at 5046.133 kb on + strand, within IAI46_23735 at 5046.152 kb on + strand, within IAI46_23735 at 5046.152 kb on + strand, within IAI46_23735 at 5046.153 kb on - strand, within IAI46_23735 at 5046.153 kb on - strand, within IAI46_23735 at 5046.153 kb on - strand, within IAI46_23735 at 5046.153 kb on - strand, within IAI46_23735 at 5046.153 kb on - strand, within IAI46_23735 at 5046.209 kb on - strand, within IAI46_23735 at 5046.246 kb on + strand, within IAI46_23735 at 5046.419 kb on - strand at 5046.419 kb on - strand at 5046.419 kb on - strand at 5046.419 kb on - strand at 5046.419 kb on - strand at 5046.419 kb on - strand at 5046.453 kb on + strand at 5046.453 kb on + strand at 5046.454 kb on - strand at 5046.454 kb on - strand at 5046.454 kb on - strand at 5046.454 kb on - strand at 5046.454 kb on - strand at 5046.485 kb on - strand at 5046.494 kb on + strand at 5046.494 kb on + strand at 5046.494 kb on + strand at 5046.494 kb on + strand at 5046.494 kb on + strand at 5046.494 kb on + strand at 5046.495 kb on - strand at 5046.495 kb on - strand at 5046.495 kb on - strand at 5046.495 kb on - strand at 5046.495 kb on - strand at 5046.495 kb on - strand at 5046.495 kb on - strand at 5046.495 kb on - strand at 5046.517 kb on + strand at 5046.517 kb on + strand at 5046.517 kb on + strand at 5046.517 kb on + strand at 5046.519 kb on + strand at 5046.519 kb on + strand at 5046.520 kb on - strand at 5046.520 kb on - strand at 5046.520 kb on - strand at 5046.520 kb on - strand at 5046.520 kb on - strand at 5046.522 kb on + strand at 5046.523 kb on - strand at 5046.537 kb on + strand at 5046.537 kb on + strand at 5046.539 kb on + strand at 5046.539 kb on + strand at 5046.591 kb on + strand at 5046.595 kb on + strand at 5046.596 kb on - strand at 5046.596 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 60 uM, anaerobic remove 5,044,101 + -0.0 5,044,101 + +0.0 5,044,101 + -0.2 5,044,158 + +1.0 5,044,158 + -0.0 5,044,158 + +0.3 5,044,159 - -0.2 5,044,159 - +0.0 5,044,159 - +0.2 5,044,159 - -0.2 5,044,159 - -0.2 5,044,225 + +0.7 5,044,226 - +0.8 5,044,226 - +0.5 5,044,252 + IAI46_23720 0.11 +0.4 5,044,252 + IAI46_23720 0.11 +0.1 5,044,252 + IAI46_23720 0.11 +0.0 5,044,252 + IAI46_23720 0.11 -0.8 5,044,253 - IAI46_23720 0.12 +0.0 5,044,280 - IAI46_23720 0.19 +1.3 5,044,295 + IAI46_23720 0.24 -0.6 5,044,316 + IAI46_23720 0.29 +0.1 5,044,317 - IAI46_23720 0.30 +0.3 5,044,390 + IAI46_23720 0.50 -1.0 5,044,391 - IAI46_23720 0.50 -0.7 5,044,391 - IAI46_23720 0.50 -0.0 5,044,391 - IAI46_23720 0.50 -0.1 5,044,391 - IAI46_23720 0.50 +0.8 5,044,394 + IAI46_23720 0.51 -0.2 5,044,394 + IAI46_23720 0.51 +1.5 5,044,394 + IAI46_23720 0.51 -0.5 5,044,394 + IAI46_23720 0.51 -0.5 5,044,567 + +0.4 5,044,567 + -0.7 5,044,567 + +0.8 5,044,568 - -0.3 5,044,568 - -0.2 5,044,568 - +0.0 5,044,692 + IAI46_23725 0.25 +0.1 5,044,693 - IAI46_23725 0.26 -1.1 5,044,695 + IAI46_23725 0.26 -0.2 5,044,695 + IAI46_23725 0.26 -0.6 5,044,695 + IAI46_23725 0.26 -1.0 5,044,695 + IAI46_23725 0.26 -1.0 5,044,696 - IAI46_23725 0.26 +0.2 5,044,696 - IAI46_23725 0.26 +1.0 5,044,705 + IAI46_23725 0.28 +0.8 5,044,788 + IAI46_23725 0.44 +0.1 5,044,788 + IAI46_23725 0.44 +0.6 5,044,788 + IAI46_23725 0.44 -0.2 5,044,788 + IAI46_23725 0.44 -0.7 5,044,789 - IAI46_23725 0.44 -0.8 5,044,809 - IAI46_23725 0.48 +2.0 5,044,826 + IAI46_23725 0.51 +0.3 5,044,826 + IAI46_23725 0.51 +0.1 5,044,827 - IAI46_23725 0.51 +0.4 5,045,072 + +0.7 5,045,072 + +1.0 5,045,072 + +0.1 5,045,072 + +0.7 5,045,073 - +0.2 5,045,073 - +0.8 5,045,073 - -0.4 5,045,073 - +0.4 5,045,103 + +0.4 5,045,104 - +0.1 5,045,104 - -0.7 5,045,104 - +0.2 5,045,176 + IAI46_23730 0.20 +0.8 5,045,176 + IAI46_23730 0.20 +1.5 5,045,207 + IAI46_23730 0.25 +0.2 5,045,208 - IAI46_23730 0.26 +0.7 5,045,236 - IAI46_23730 0.31 +0.2 5,045,247 + IAI46_23730 0.33 -0.4 5,045,248 - IAI46_23730 0.33 +0.2 5,045,250 + IAI46_23730 0.33 -0.5 5,045,251 - IAI46_23730 0.34 -0.2 5,045,251 - IAI46_23730 0.34 -0.3 5,045,251 - IAI46_23730 0.34 +0.8 5,045,251 - IAI46_23730 0.34 -0.7 5,045,365 + IAI46_23730 0.55 +0.2 5,045,604 - -0.2 5,045,667 + +0.8 5,045,667 + +0.5 5,045,668 - +0.4 5,045,668 - +0.7 5,045,694 + -0.8 5,045,704 - IAI46_23735 0.11 +0.7 5,045,757 + IAI46_23735 0.17 -0.1 5,045,760 - IAI46_23735 0.18 +0.5 5,045,760 - IAI46_23735 0.18 -0.4 5,045,763 - IAI46_23735 0.18 -0.6 5,045,763 - IAI46_23735 0.18 -0.7 5,045,776 - IAI46_23735 0.20 +0.4 5,045,776 - IAI46_23735 0.20 -0.4 5,045,868 + IAI46_23735 0.30 -0.6 5,045,869 - IAI46_23735 0.31 -0.0 5,045,888 - IAI46_23735 0.33 -1.8 5,045,973 + IAI46_23735 0.43 -2.2 5,045,973 + IAI46_23735 0.43 -0.2 5,045,974 - IAI46_23735 0.43 +0.2 5,045,974 - IAI46_23735 0.43 -0.5 5,045,976 + IAI46_23735 0.43 +0.1 5,045,984 - IAI46_23735 0.44 +0.4 5,046,008 + IAI46_23735 0.47 +0.4 5,046,009 - IAI46_23735 0.47 -0.9 5,046,133 + IAI46_23735 0.62 +0.2 5,046,133 + IAI46_23735 0.62 +0.2 5,046,152 + IAI46_23735 0.64 +0.4 5,046,152 + IAI46_23735 0.64 +0.7 5,046,153 - IAI46_23735 0.64 -0.5 5,046,153 - IAI46_23735 0.64 -1.1 5,046,153 - IAI46_23735 0.64 +0.4 5,046,153 - IAI46_23735 0.64 +1.4 5,046,153 - IAI46_23735 0.64 +0.1 5,046,209 - IAI46_23735 0.71 +0.8 5,046,246 + IAI46_23735 0.75 +0.3 5,046,419 - -1.4 5,046,419 - -0.3 5,046,419 - -0.3 5,046,419 - +0.4 5,046,419 - +0.4 5,046,419 - -0.5 5,046,453 + +0.6 5,046,453 + +0.1 5,046,454 - -0.4 5,046,454 - -0.0 5,046,454 - -0.8 5,046,454 - +0.1 5,046,454 - +0.3 5,046,485 - +0.6 5,046,494 + +0.1 5,046,494 + +0.1 5,046,494 + -0.3 5,046,494 + +0.9 5,046,494 + +0.4 5,046,494 + +0.0 5,046,495 - +0.2 5,046,495 - +0.0 5,046,495 - -0.0 5,046,495 - -0.2 5,046,495 - +0.3 5,046,495 - +0.1 5,046,495 - -0.2 5,046,495 - -0.5 5,046,517 + -0.4 5,046,517 + -0.8 5,046,517 + +0.3 5,046,517 + +0.1 5,046,519 + +0.8 5,046,519 + -1.3 5,046,520 - +0.5 5,046,520 - +0.8 5,046,520 - -1.0 5,046,520 - -1.1 5,046,520 - -0.0 5,046,522 + +0.4 5,046,523 - +0.4 5,046,537 + +0.2 5,046,537 + +0.3 5,046,539 + +1.3 5,046,539 + +0.3 5,046,591 + +0.2 5,046,595 + +0.2 5,046,596 - +0.1 5,046,596 - +0.9
Or see this region's nucleotide sequence