Experiment: Cobalt chloride 60 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_23660 and IAI46_23665 are separated by 30 nucleotides IAI46_23665 and IAI46_23670 are separated by 49 nucleotides IAI46_23670 and IAI46_23675 are separated by 50 nucleotides
IAI46_23660: IAI46_23660 - nitrite reductase small subunit NirD, at 5,033,546 to 5,033,872
_23660
IAI46_23665: IAI46_23665 - nitrite transporter NirC, at 5,033,903 to 5,034,703
_23665
IAI46_23670: IAI46_23670 - uroporphyrinogen-III C-methyltransferase, at 5,034,753 to 5,036,156
_23670
IAI46_23675: IAI46_23675 - tryptophan--tRNA ligase, at 5,036,207 to 5,037,211
_23675
Position (kb) 5034
5035
5036
5037 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5033.793 kb on - strand, within IAI46_23660 at 5033.793 kb on - strand, within IAI46_23660 at 5033.880 kb on - strand at 5033.884 kb on + strand at 5033.884 kb on + strand at 5033.884 kb on + strand at 5034.012 kb on - strand, within IAI46_23665 at 5034.012 kb on - strand, within IAI46_23665 at 5034.269 kb on + strand, within IAI46_23665 at 5034.269 kb on + strand, within IAI46_23665 at 5034.269 kb on + strand, within IAI46_23665 at 5034.269 kb on + strand, within IAI46_23665 at 5034.270 kb on - strand, within IAI46_23665 at 5034.272 kb on + strand, within IAI46_23665 at 5034.272 kb on + strand, within IAI46_23665 at 5034.272 kb on + strand, within IAI46_23665 at 5034.272 kb on + strand, within IAI46_23665 at 5034.272 kb on + strand, within IAI46_23665 at 5034.273 kb on - strand, within IAI46_23665 at 5034.273 kb on - strand, within IAI46_23665 at 5034.273 kb on - strand, within IAI46_23665 at 5034.273 kb on - strand, within IAI46_23665 at 5034.275 kb on + strand, within IAI46_23665 at 5034.276 kb on - strand, within IAI46_23665 at 5034.382 kb on + strand, within IAI46_23665 at 5034.506 kb on - strand, within IAI46_23665 at 5034.551 kb on + strand, within IAI46_23665 at 5034.551 kb on + strand, within IAI46_23665 at 5034.552 kb on - strand, within IAI46_23665 at 5034.552 kb on - strand, within IAI46_23665 at 5034.552 kb on - strand, within IAI46_23665 at 5034.552 kb on - strand, within IAI46_23665 at 5034.599 kb on - strand, within IAI46_23665 at 5034.602 kb on - strand, within IAI46_23665 at 5034.602 kb on - strand, within IAI46_23665 at 5034.702 kb on - strand at 5034.702 kb on - strand at 5034.704 kb on + strand at 5034.704 kb on + strand at 5034.705 kb on - strand at 5034.705 kb on - strand at 5034.760 kb on - strand at 5034.760 kb on - strand at 5034.979 kb on + strand, within IAI46_23670 at 5035.018 kb on + strand, within IAI46_23670 at 5035.019 kb on - strand, within IAI46_23670 at 5035.019 kb on - strand, within IAI46_23670 at 5035.020 kb on + strand, within IAI46_23670 at 5035.020 kb on + strand, within IAI46_23670 at 5035.085 kb on + strand, within IAI46_23670 at 5035.118 kb on + strand, within IAI46_23670 at 5035.118 kb on + strand, within IAI46_23670 at 5035.119 kb on - strand, within IAI46_23670 at 5035.119 kb on - strand, within IAI46_23670 at 5035.119 kb on - strand, within IAI46_23670 at 5035.631 kb on + strand, within IAI46_23670 at 5035.632 kb on - strand, within IAI46_23670 at 5035.643 kb on - strand, within IAI46_23670 at 5035.716 kb on - strand, within IAI46_23670 at 5035.767 kb on + strand, within IAI46_23670 at 5035.893 kb on + strand, within IAI46_23670 at 5035.893 kb on + strand, within IAI46_23670 at 5035.894 kb on - strand, within IAI46_23670 at 5035.894 kb on - strand, within IAI46_23670 at 5036.065 kb on + strand at 5036.066 kb on - strand at 5036.239 kb on - strand at 5036.403 kb on + strand, within IAI46_23675 at 5036.403 kb on + strand, within IAI46_23675 at 5036.403 kb on + strand, within IAI46_23675 at 5036.403 kb on + strand, within IAI46_23675 at 5036.709 kb on + strand, within IAI46_23675 at 5036.709 kb on + strand, within IAI46_23675 at 5036.710 kb on - strand, within IAI46_23675 at 5036.796 kb on + strand, within IAI46_23675 at 5036.797 kb on - strand, within IAI46_23675 at 5036.797 kb on - strand, within IAI46_23675 at 5036.913 kb on + strand, within IAI46_23675 at 5036.913 kb on + strand, within IAI46_23675 at 5036.914 kb on - strand, within IAI46_23675 at 5036.917 kb on + strand, within IAI46_23675 at 5036.917 kb on + strand, within IAI46_23675 at 5036.917 kb on + strand, within IAI46_23675 at 5036.918 kb on - strand, within IAI46_23675 at 5036.918 kb on - strand, within IAI46_23675 at 5036.918 kb on - strand, within IAI46_23675 at 5036.919 kb on + strand, within IAI46_23675 at 5036.919 kb on + strand, within IAI46_23675 at 5036.919 kb on + strand, within IAI46_23675 at 5036.919 kb on + strand, within IAI46_23675 at 5036.919 kb on + strand, within IAI46_23675 at 5036.920 kb on - strand, within IAI46_23675 at 5036.920 kb on - strand, within IAI46_23675 at 5036.920 kb on - strand, within IAI46_23675 at 5036.920 kb on - strand, within IAI46_23675 at 5036.947 kb on + strand, within IAI46_23675 at 5036.948 kb on - strand, within IAI46_23675 at 5036.948 kb on - strand, within IAI46_23675 at 5036.970 kb on - strand, within IAI46_23675 at 5036.970 kb on - strand, within IAI46_23675 at 5036.970 kb on - strand, within IAI46_23675 at 5037.035 kb on - strand, within IAI46_23675 at 5037.035 kb on - strand, within IAI46_23675 at 5037.096 kb on + strand, within IAI46_23675 at 5037.096 kb on + strand, within IAI46_23675 at 5037.150 kb on + strand at 5037.150 kb on + strand at 5037.150 kb on + strand at 5037.150 kb on + strand at 5037.150 kb on + strand at 5037.150 kb on + strand at 5037.151 kb on - strand at 5037.151 kb on - strand at 5037.151 kb on - strand at 5037.151 kb on - strand at 5037.151 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 60 uM, anaerobic remove 5,033,793 - IAI46_23660 0.76 -1.1 5,033,793 - IAI46_23660 0.76 +1.1 5,033,880 - -0.9 5,033,884 + +0.5 5,033,884 + +1.8 5,033,884 + +0.6 5,034,012 - IAI46_23665 0.14 -1.9 5,034,012 - IAI46_23665 0.14 -0.3 5,034,269 + IAI46_23665 0.46 +0.1 5,034,269 + IAI46_23665 0.46 -0.0 5,034,269 + IAI46_23665 0.46 +0.3 5,034,269 + IAI46_23665 0.46 +0.2 5,034,270 - IAI46_23665 0.46 +0.4 5,034,272 + IAI46_23665 0.46 +0.7 5,034,272 + IAI46_23665 0.46 +0.4 5,034,272 + IAI46_23665 0.46 -0.1 5,034,272 + IAI46_23665 0.46 -0.3 5,034,272 + IAI46_23665 0.46 -0.5 5,034,273 - IAI46_23665 0.46 -0.8 5,034,273 - IAI46_23665 0.46 -0.4 5,034,273 - IAI46_23665 0.46 +0.5 5,034,273 - IAI46_23665 0.46 +0.3 5,034,275 + IAI46_23665 0.46 -0.7 5,034,276 - IAI46_23665 0.47 -0.5 5,034,382 + IAI46_23665 0.60 +0.3 5,034,506 - IAI46_23665 0.75 -0.3 5,034,551 + IAI46_23665 0.81 +0.4 5,034,551 + IAI46_23665 0.81 -1.1 5,034,552 - IAI46_23665 0.81 +1.1 5,034,552 - IAI46_23665 0.81 -0.0 5,034,552 - IAI46_23665 0.81 +0.5 5,034,552 - IAI46_23665 0.81 +0.1 5,034,599 - IAI46_23665 0.87 +1.0 5,034,602 - IAI46_23665 0.87 +0.5 5,034,602 - IAI46_23665 0.87 +0.1 5,034,702 - +1.3 5,034,702 - +0.6 5,034,704 + +0.0 5,034,704 + -0.5 5,034,705 - -0.0 5,034,705 - +0.1 5,034,760 - -0.0 5,034,760 - -2.5 5,034,979 + IAI46_23670 0.16 -0.1 5,035,018 + IAI46_23670 0.19 +0.5 5,035,019 - IAI46_23670 0.19 -0.7 5,035,019 - IAI46_23670 0.19 -0.0 5,035,020 + IAI46_23670 0.19 -0.3 5,035,020 + IAI46_23670 0.19 +0.7 5,035,085 + IAI46_23670 0.24 -0.6 5,035,118 + IAI46_23670 0.26 -0.2 5,035,118 + IAI46_23670 0.26 +0.2 5,035,119 - IAI46_23670 0.26 +0.1 5,035,119 - IAI46_23670 0.26 -0.3 5,035,119 - IAI46_23670 0.26 +0.8 5,035,631 + IAI46_23670 0.63 +0.7 5,035,632 - IAI46_23670 0.63 +0.2 5,035,643 - IAI46_23670 0.63 -0.2 5,035,716 - IAI46_23670 0.69 +0.3 5,035,767 + IAI46_23670 0.72 +0.1 5,035,893 + IAI46_23670 0.81 -0.4 5,035,893 + IAI46_23670 0.81 +1.0 5,035,894 - IAI46_23670 0.81 +0.0 5,035,894 - IAI46_23670 0.81 +0.4 5,036,065 + +0.5 5,036,066 - -0.2 5,036,239 - +0.4 5,036,403 + IAI46_23675 0.20 -0.2 5,036,403 + IAI46_23675 0.20 +0.2 5,036,403 + IAI46_23675 0.20 +2.3 5,036,403 + IAI46_23675 0.20 +0.6 5,036,709 + IAI46_23675 0.50 +0.3 5,036,709 + IAI46_23675 0.50 -0.3 5,036,710 - IAI46_23675 0.50 -0.9 5,036,796 + IAI46_23675 0.59 -0.1 5,036,797 - IAI46_23675 0.59 -1.7 5,036,797 - IAI46_23675 0.59 -0.6 5,036,913 + IAI46_23675 0.70 +0.5 5,036,913 + IAI46_23675 0.70 +0.3 5,036,914 - IAI46_23675 0.70 -0.5 5,036,917 + IAI46_23675 0.71 -0.0 5,036,917 + IAI46_23675 0.71 -1.7 5,036,917 + IAI46_23675 0.71 +0.1 5,036,918 - IAI46_23675 0.71 -0.0 5,036,918 - IAI46_23675 0.71 +0.4 5,036,918 - IAI46_23675 0.71 +0.0 5,036,919 + IAI46_23675 0.71 -0.0 5,036,919 + IAI46_23675 0.71 -0.3 5,036,919 + IAI46_23675 0.71 +0.5 5,036,919 + IAI46_23675 0.71 -0.0 5,036,919 + IAI46_23675 0.71 -1.1 5,036,920 - IAI46_23675 0.71 -0.7 5,036,920 - IAI46_23675 0.71 +1.5 5,036,920 - IAI46_23675 0.71 +0.3 5,036,920 - IAI46_23675 0.71 -2.0 5,036,947 + IAI46_23675 0.74 +0.7 5,036,948 - IAI46_23675 0.74 -0.7 5,036,948 - IAI46_23675 0.74 -0.3 5,036,970 - IAI46_23675 0.76 +0.0 5,036,970 - IAI46_23675 0.76 +1.4 5,036,970 - IAI46_23675 0.76 +1.0 5,037,035 - IAI46_23675 0.82 -0.5 5,037,035 - IAI46_23675 0.82 +0.0 5,037,096 + IAI46_23675 0.88 -0.6 5,037,096 + IAI46_23675 0.88 +0.7 5,037,150 + +1.0 5,037,150 + +0.9 5,037,150 + -0.0 5,037,150 + -0.3 5,037,150 + -0.1 5,037,150 + +0.4 5,037,151 - +0.5 5,037,151 - -1.2 5,037,151 - +0.2 5,037,151 - -0.0 5,037,151 - +0.7
Or see this region's nucleotide sequence