Strain Fitness in Serratia liquefaciens MT49 around IAI46_23665

Experiment: Cobalt chloride 60 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_23655 and IAI46_23660 overlap by 4 nucleotidesIAI46_23660 and IAI46_23665 are separated by 30 nucleotidesIAI46_23665 and IAI46_23670 are separated by 49 nucleotides IAI46_23655: IAI46_23655 - nitrite reductase large subunit, at 5,031,000 to 5,033,549 _23655 IAI46_23660: IAI46_23660 - nitrite reductase small subunit NirD, at 5,033,546 to 5,033,872 _23660 IAI46_23665: IAI46_23665 - nitrite transporter NirC, at 5,033,903 to 5,034,703 _23665 IAI46_23670: IAI46_23670 - uroporphyrinogen-III C-methyltransferase, at 5,034,753 to 5,036,156 _23670 Position (kb) 5033 5034 5035Strain fitness (log2 ratio) -2 -1 0 1 2at 5032.989 kb on + strand, within IAI46_23655at 5032.989 kb on + strand, within IAI46_23655at 5032.990 kb on - strand, within IAI46_23655at 5032.990 kb on - strand, within IAI46_23655at 5033.079 kb on - strand, within IAI46_23655at 5033.110 kb on - strand, within IAI46_23655at 5033.110 kb on - strand, within IAI46_23655at 5033.190 kb on + strand, within IAI46_23655at 5033.190 kb on + strand, within IAI46_23655at 5033.190 kb on + strand, within IAI46_23655at 5033.191 kb on - strand, within IAI46_23655at 5033.191 kb on - strand, within IAI46_23655at 5033.191 kb on - strand, within IAI46_23655at 5033.191 kb on - strand, within IAI46_23655at 5033.205 kb on - strand, within IAI46_23655at 5033.214 kb on + strand, within IAI46_23655at 5033.214 kb on + strand, within IAI46_23655at 5033.214 kb on + strand, within IAI46_23655at 5033.214 kb on + strand, within IAI46_23655at 5033.214 kb on + strand, within IAI46_23655at 5033.215 kb on - strand, within IAI46_23655at 5033.215 kb on - strand, within IAI46_23655at 5033.244 kb on - strand, within IAI46_23655at 5033.244 kb on - strand, within IAI46_23655at 5033.426 kb on + strandat 5033.427 kb on - strandat 5033.573 kb on - strandat 5033.646 kb on - strand, within IAI46_23660at 5033.646 kb on - strand, within IAI46_23660at 5033.677 kb on + strand, within IAI46_23660at 5033.677 kb on + strand, within IAI46_23660at 5033.678 kb on - strand, within IAI46_23660at 5033.793 kb on - strand, within IAI46_23660at 5033.793 kb on - strand, within IAI46_23660at 5033.880 kb on - strandat 5033.884 kb on + strandat 5033.884 kb on + strandat 5033.884 kb on + strandat 5034.012 kb on - strand, within IAI46_23665at 5034.012 kb on - strand, within IAI46_23665at 5034.269 kb on + strand, within IAI46_23665at 5034.269 kb on + strand, within IAI46_23665at 5034.269 kb on + strand, within IAI46_23665at 5034.269 kb on + strand, within IAI46_23665at 5034.270 kb on - strand, within IAI46_23665at 5034.272 kb on + strand, within IAI46_23665at 5034.272 kb on + strand, within IAI46_23665at 5034.272 kb on + strand, within IAI46_23665at 5034.272 kb on + strand, within IAI46_23665at 5034.272 kb on + strand, within IAI46_23665at 5034.273 kb on - strand, within IAI46_23665at 5034.273 kb on - strand, within IAI46_23665at 5034.273 kb on - strand, within IAI46_23665at 5034.273 kb on - strand, within IAI46_23665at 5034.275 kb on + strand, within IAI46_23665at 5034.276 kb on - strand, within IAI46_23665at 5034.382 kb on + strand, within IAI46_23665at 5034.506 kb on - strand, within IAI46_23665at 5034.551 kb on + strand, within IAI46_23665at 5034.551 kb on + strand, within IAI46_23665at 5034.552 kb on - strand, within IAI46_23665at 5034.552 kb on - strand, within IAI46_23665at 5034.552 kb on - strand, within IAI46_23665at 5034.552 kb on - strand, within IAI46_23665at 5034.599 kb on - strand, within IAI46_23665at 5034.602 kb on - strand, within IAI46_23665at 5034.602 kb on - strand, within IAI46_23665at 5034.702 kb on - strandat 5034.702 kb on - strandat 5034.704 kb on + strandat 5034.704 kb on + strandat 5034.705 kb on - strandat 5034.705 kb on - strandat 5034.760 kb on - strandat 5034.760 kb on - strandat 5034.979 kb on + strand, within IAI46_23670at 5035.018 kb on + strand, within IAI46_23670at 5035.019 kb on - strand, within IAI46_23670at 5035.019 kb on - strand, within IAI46_23670at 5035.020 kb on + strand, within IAI46_23670at 5035.020 kb on + strand, within IAI46_23670at 5035.085 kb on + strand, within IAI46_23670at 5035.118 kb on + strand, within IAI46_23670at 5035.118 kb on + strand, within IAI46_23670at 5035.119 kb on - strand, within IAI46_23670at 5035.119 kb on - strand, within IAI46_23670at 5035.119 kb on - strand, within IAI46_23670at 5035.631 kb on + strand, within IAI46_23670at 5035.632 kb on - strand, within IAI46_23670at 5035.643 kb on - strand, within IAI46_23670

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 60 uM, anaerobic
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5,032,989 + IAI46_23655 0.78 +0.3
5,032,989 + IAI46_23655 0.78 -0.6
5,032,990 - IAI46_23655 0.78 +0.5
5,032,990 - IAI46_23655 0.78 -0.2
5,033,079 - IAI46_23655 0.82 +0.2
5,033,110 - IAI46_23655 0.83 +0.2
5,033,110 - IAI46_23655 0.83 -0.4
5,033,190 + IAI46_23655 0.86 +0.2
5,033,190 + IAI46_23655 0.86 -0.7
5,033,190 + IAI46_23655 0.86 +0.6
5,033,191 - IAI46_23655 0.86 -0.0
5,033,191 - IAI46_23655 0.86 +1.2
5,033,191 - IAI46_23655 0.86 -0.5
5,033,191 - IAI46_23655 0.86 +0.6
5,033,205 - IAI46_23655 0.86 -0.0
5,033,214 + IAI46_23655 0.87 -1.8
5,033,214 + IAI46_23655 0.87 -0.2
5,033,214 + IAI46_23655 0.87 -0.2
5,033,214 + IAI46_23655 0.87 -1.9
5,033,214 + IAI46_23655 0.87 +0.6
5,033,215 - IAI46_23655 0.87 +0.1
5,033,215 - IAI46_23655 0.87 +0.8
5,033,244 - IAI46_23655 0.88 -1.3
5,033,244 - IAI46_23655 0.88 -0.4
5,033,426 + -0.7
5,033,427 - +0.4
5,033,573 - +0.1
5,033,646 - IAI46_23660 0.31 +0.3
5,033,646 - IAI46_23660 0.31 +0.4
5,033,677 + IAI46_23660 0.40 -0.7
5,033,677 + IAI46_23660 0.40 -1.0
5,033,678 - IAI46_23660 0.40 -0.7
5,033,793 - IAI46_23660 0.76 -1.1
5,033,793 - IAI46_23660 0.76 +1.1
5,033,880 - -0.9
5,033,884 + +0.5
5,033,884 + +1.8
5,033,884 + +0.6
5,034,012 - IAI46_23665 0.14 -1.9
5,034,012 - IAI46_23665 0.14 -0.3
5,034,269 + IAI46_23665 0.46 +0.1
5,034,269 + IAI46_23665 0.46 -0.0
5,034,269 + IAI46_23665 0.46 +0.3
5,034,269 + IAI46_23665 0.46 +0.2
5,034,270 - IAI46_23665 0.46 +0.4
5,034,272 + IAI46_23665 0.46 +0.7
5,034,272 + IAI46_23665 0.46 +0.4
5,034,272 + IAI46_23665 0.46 -0.1
5,034,272 + IAI46_23665 0.46 -0.3
5,034,272 + IAI46_23665 0.46 -0.5
5,034,273 - IAI46_23665 0.46 -0.8
5,034,273 - IAI46_23665 0.46 -0.4
5,034,273 - IAI46_23665 0.46 +0.5
5,034,273 - IAI46_23665 0.46 +0.3
5,034,275 + IAI46_23665 0.46 -0.7
5,034,276 - IAI46_23665 0.47 -0.5
5,034,382 + IAI46_23665 0.60 +0.3
5,034,506 - IAI46_23665 0.75 -0.3
5,034,551 + IAI46_23665 0.81 +0.4
5,034,551 + IAI46_23665 0.81 -1.1
5,034,552 - IAI46_23665 0.81 +1.1
5,034,552 - IAI46_23665 0.81 -0.0
5,034,552 - IAI46_23665 0.81 +0.5
5,034,552 - IAI46_23665 0.81 +0.1
5,034,599 - IAI46_23665 0.87 +1.0
5,034,602 - IAI46_23665 0.87 +0.5
5,034,602 - IAI46_23665 0.87 +0.1
5,034,702 - +1.3
5,034,702 - +0.6
5,034,704 + +0.0
5,034,704 + -0.5
5,034,705 - -0.0
5,034,705 - +0.1
5,034,760 - -0.0
5,034,760 - -2.5
5,034,979 + IAI46_23670 0.16 -0.1
5,035,018 + IAI46_23670 0.19 +0.5
5,035,019 - IAI46_23670 0.19 -0.7
5,035,019 - IAI46_23670 0.19 -0.0
5,035,020 + IAI46_23670 0.19 -0.3
5,035,020 + IAI46_23670 0.19 +0.7
5,035,085 + IAI46_23670 0.24 -0.6
5,035,118 + IAI46_23670 0.26 -0.2
5,035,118 + IAI46_23670 0.26 +0.2
5,035,119 - IAI46_23670 0.26 +0.1
5,035,119 - IAI46_23670 0.26 -0.3
5,035,119 - IAI46_23670 0.26 +0.8
5,035,631 + IAI46_23670 0.63 +0.7
5,035,632 - IAI46_23670 0.63 +0.2
5,035,643 - IAI46_23670 0.63 -0.2

Or see this region's nucleotide sequence