Strain Fitness in Serratia liquefaciens MT49 around IAI46_22910

Experiment: Cobalt chloride 60 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_22905 and IAI46_22910 are separated by 224 nucleotidesIAI46_22910 and IAI46_22915 are separated by 34 nucleotidesIAI46_22915 and IAI46_22920 are separated by 175 nucleotides IAI46_22905: IAI46_22905 - excinuclease ABC subunit UvrA, at 4,885,319 to 4,888,150 _22905 IAI46_22910: IAI46_22910 - NAD(P)-dependent alcohol dehydrogenase, at 4,888,375 to 4,889,427 _22910 IAI46_22915: IAI46_22915 - maltose O-acetyltransferase, at 4,889,462 to 4,890,013 _22915 IAI46_22920: IAI46_22920 - MmcQ/YjbR family DNA-binding protein, at 4,890,189 to 4,890,542 _22920 Position (kb) 4888 4889 4890Strain fitness (log2 ratio) -2 -1 0 1at 4887.428 kb on + strand, within IAI46_22905at 4887.429 kb on - strand, within IAI46_22905at 4887.494 kb on + strand, within IAI46_22905at 4887.517 kb on + strand, within IAI46_22905at 4887.518 kb on - strand, within IAI46_22905at 4887.518 kb on - strand, within IAI46_22905at 4887.596 kb on + strand, within IAI46_22905at 4887.596 kb on + strand, within IAI46_22905at 4887.596 kb on + strand, within IAI46_22905at 4887.596 kb on + strand, within IAI46_22905at 4887.596 kb on + strand, within IAI46_22905at 4887.596 kb on + strand, within IAI46_22905at 4887.596 kb on + strand, within IAI46_22905at 4887.596 kb on + strand, within IAI46_22905at 4887.596 kb on + strand, within IAI46_22905at 4887.596 kb on + strand, within IAI46_22905at 4887.596 kb on + strand, within IAI46_22905at 4887.596 kb on + strand, within IAI46_22905at 4887.596 kb on + strand, within IAI46_22905at 4887.596 kb on + strand, within IAI46_22905at 4887.596 kb on + strand, within IAI46_22905at 4887.596 kb on + strand, within IAI46_22905at 4887.597 kb on - strand, within IAI46_22905at 4887.597 kb on - strand, within IAI46_22905at 4887.597 kb on - strand, within IAI46_22905at 4887.597 kb on - strand, within IAI46_22905at 4887.597 kb on - strand, within IAI46_22905at 4887.597 kb on - strand, within IAI46_22905at 4887.597 kb on - strand, within IAI46_22905at 4887.597 kb on - strand, within IAI46_22905at 4887.597 kb on - strand, within IAI46_22905at 4887.597 kb on - strand, within IAI46_22905at 4887.597 kb on - strand, within IAI46_22905at 4887.597 kb on - strand, within IAI46_22905at 4887.597 kb on - strand, within IAI46_22905at 4887.597 kb on - strand, within IAI46_22905at 4887.597 kb on - strand, within IAI46_22905at 4887.600 kb on + strand, within IAI46_22905at 4887.629 kb on + strand, within IAI46_22905at 4887.629 kb on + strand, within IAI46_22905at 4887.629 kb on + strand, within IAI46_22905at 4887.630 kb on - strand, within IAI46_22905at 4887.742 kb on + strand, within IAI46_22905at 4887.742 kb on + strand, within IAI46_22905at 4887.742 kb on + strand, within IAI46_22905at 4887.742 kb on + strand, within IAI46_22905at 4887.743 kb on - strand, within IAI46_22905at 4887.776 kb on + strand, within IAI46_22905at 4887.776 kb on + strand, within IAI46_22905at 4887.776 kb on + strand, within IAI46_22905at 4887.776 kb on + strand, within IAI46_22905at 4887.777 kb on - strand, within IAI46_22905at 4887.777 kb on - strand, within IAI46_22905at 4887.777 kb on - strand, within IAI46_22905at 4887.777 kb on - strand, within IAI46_22905at 4887.777 kb on - strand, within IAI46_22905at 4887.878 kb on + strandat 4887.878 kb on + strandat 4887.878 kb on + strandat 4887.879 kb on - strandat 4887.968 kb on - strandat 4887.968 kb on - strandat 4887.968 kb on - strandat 4888.003 kb on + strandat 4888.004 kb on - strandat 4888.094 kb on - strandat 4888.127 kb on - strandat 4888.148 kb on + strandat 4888.271 kb on - strandat 4888.329 kb on + strandat 4888.353 kb on + strandat 4888.371 kb on + strandat 4888.371 kb on + strandat 4888.372 kb on - strandat 4888.383 kb on + strandat 4888.384 kb on - strandat 4888.384 kb on - strandat 4888.393 kb on + strandat 4888.394 kb on - strandat 4888.421 kb on + strandat 4888.421 kb on + strandat 4888.436 kb on - strandat 4888.509 kb on - strand, within IAI46_22910at 4888.641 kb on + strand, within IAI46_22910at 4888.641 kb on + strand, within IAI46_22910at 4888.642 kb on - strand, within IAI46_22910at 4888.642 kb on - strand, within IAI46_22910at 4888.693 kb on + strand, within IAI46_22910at 4888.720 kb on + strand, within IAI46_22910at 4888.720 kb on + strand, within IAI46_22910at 4888.720 kb on + strand, within IAI46_22910at 4888.720 kb on + strand, within IAI46_22910at 4888.720 kb on + strand, within IAI46_22910at 4888.720 kb on + strand, within IAI46_22910at 4888.720 kb on + strand, within IAI46_22910at 4888.720 kb on + strand, within IAI46_22910at 4888.721 kb on - strand, within IAI46_22910at 4888.721 kb on - strand, within IAI46_22910at 4888.722 kb on + strand, within IAI46_22910at 4888.722 kb on + strand, within IAI46_22910at 4888.756 kb on + strand, within IAI46_22910at 4888.757 kb on - strand, within IAI46_22910at 4888.765 kb on + strand, within IAI46_22910at 4888.781 kb on + strand, within IAI46_22910at 4888.781 kb on + strand, within IAI46_22910at 4888.782 kb on - strand, within IAI46_22910at 4888.782 kb on - strand, within IAI46_22910at 4888.784 kb on + strand, within IAI46_22910at 4888.785 kb on - strand, within IAI46_22910at 4888.785 kb on - strand, within IAI46_22910at 4888.845 kb on - strand, within IAI46_22910at 4888.867 kb on + strand, within IAI46_22910at 4889.097 kb on + strand, within IAI46_22910at 4889.104 kb on - strand, within IAI46_22910at 4889.218 kb on - strand, within IAI46_22910at 4889.218 kb on - strand, within IAI46_22910at 4889.313 kb on + strand, within IAI46_22910at 4889.313 kb on + strand, within IAI46_22910at 4889.314 kb on - strand, within IAI46_22910at 4889.314 kb on - strand, within IAI46_22910at 4889.425 kb on + strandat 4889.426 kb on - strandat 4889.464 kb on - strandat 4889.474 kb on + strandat 4889.475 kb on - strandat 4889.581 kb on + strand, within IAI46_22915at 4889.582 kb on - strand, within IAI46_22915at 4889.611 kb on + strand, within IAI46_22915at 4889.611 kb on + strand, within IAI46_22915at 4889.686 kb on + strand, within IAI46_22915at 4889.688 kb on + strand, within IAI46_22915at 4889.688 kb on + strand, within IAI46_22915at 4889.688 kb on + strand, within IAI46_22915at 4889.688 kb on + strand, within IAI46_22915at 4889.689 kb on - strand, within IAI46_22915at 4889.689 kb on - strand, within IAI46_22915at 4889.689 kb on - strand, within IAI46_22915at 4889.692 kb on + strand, within IAI46_22915at 4889.692 kb on + strand, within IAI46_22915at 4889.693 kb on - strand, within IAI46_22915at 4889.693 kb on - strand, within IAI46_22915at 4889.693 kb on - strand, within IAI46_22915at 4889.693 kb on - strand, within IAI46_22915at 4889.693 kb on - strand, within IAI46_22915at 4889.719 kb on + strand, within IAI46_22915at 4889.719 kb on + strand, within IAI46_22915at 4889.719 kb on + strand, within IAI46_22915at 4889.719 kb on + strand, within IAI46_22915at 4889.720 kb on - strand, within IAI46_22915at 4889.741 kb on + strand, within IAI46_22915at 4889.790 kb on + strand, within IAI46_22915at 4889.790 kb on + strand, within IAI46_22915at 4889.791 kb on - strand, within IAI46_22915at 4889.799 kb on + strand, within IAI46_22915at 4889.800 kb on - strand, within IAI46_22915at 4889.911 kb on - strand, within IAI46_22915at 4889.974 kb on - strandat 4890.037 kb on + strandat 4890.037 kb on + strandat 4890.054 kb on + strandat 4890.055 kb on - strandat 4890.063 kb on + strandat 4890.168 kb on + strandat 4890.169 kb on - strandat 4890.169 kb on - strandat 4890.181 kb on - strandat 4890.183 kb on - strandat 4890.184 kb on + strandat 4890.184 kb on + strandat 4890.184 kb on + strandat 4890.184 kb on + strandat 4890.185 kb on - strandat 4890.185 kb on - strandat 4890.185 kb on - strandat 4890.191 kb on - strandat 4890.245 kb on - strand, within IAI46_22920at 4890.245 kb on - strand, within IAI46_22920at 4890.263 kb on + strand, within IAI46_22920at 4890.264 kb on - strand, within IAI46_22920at 4890.265 kb on + strand, within IAI46_22920at 4890.265 kb on + strand, within IAI46_22920at 4890.265 kb on + strand, within IAI46_22920at 4890.265 kb on + strand, within IAI46_22920at 4890.265 kb on + strand, within IAI46_22920at 4890.305 kb on + strand, within IAI46_22920at 4890.364 kb on - strand, within IAI46_22920at 4890.417 kb on + strand, within IAI46_22920

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 60 uM, anaerobic
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4,887,428 + IAI46_22905 0.74 +0.4
4,887,429 - IAI46_22905 0.75 +0.4
4,887,494 + IAI46_22905 0.77 -0.3
4,887,517 + IAI46_22905 0.78 -0.1
4,887,518 - IAI46_22905 0.78 +0.3
4,887,518 - IAI46_22905 0.78 +0.3
4,887,596 + IAI46_22905 0.80 +1.0
4,887,596 + IAI46_22905 0.80 +0.6
4,887,596 + IAI46_22905 0.80 +0.6
4,887,596 + IAI46_22905 0.80 -0.5
4,887,596 + IAI46_22905 0.80 -0.4
4,887,596 + IAI46_22905 0.80 +0.6
4,887,596 + IAI46_22905 0.80 -0.3
4,887,596 + IAI46_22905 0.80 -0.0
4,887,596 + IAI46_22905 0.80 -0.2
4,887,596 + IAI46_22905 0.80 +0.5
4,887,596 + IAI46_22905 0.80 +0.6
4,887,596 + IAI46_22905 0.80 +0.9
4,887,596 + IAI46_22905 0.80 +0.0
4,887,596 + IAI46_22905 0.80 -0.1
4,887,596 + IAI46_22905 0.80 +0.7
4,887,596 + IAI46_22905 0.80 -0.0
4,887,597 - IAI46_22905 0.80 +1.7
4,887,597 - IAI46_22905 0.80 +0.3
4,887,597 - IAI46_22905 0.80 +0.8
4,887,597 - IAI46_22905 0.80 -0.6
4,887,597 - IAI46_22905 0.80 +0.2
4,887,597 - IAI46_22905 0.80 -1.1
4,887,597 - IAI46_22905 0.80 -0.5
4,887,597 - IAI46_22905 0.80 +0.5
4,887,597 - IAI46_22905 0.80 -0.1
4,887,597 - IAI46_22905 0.80 +0.3
4,887,597 - IAI46_22905 0.80 +0.4
4,887,597 - IAI46_22905 0.80 -1.1
4,887,597 - IAI46_22905 0.80 -0.4
4,887,597 - IAI46_22905 0.80 -0.7
4,887,597 - IAI46_22905 0.80 +0.2
4,887,600 + IAI46_22905 0.81 -0.1
4,887,629 + IAI46_22905 0.82 +0.7
4,887,629 + IAI46_22905 0.82 -0.2
4,887,629 + IAI46_22905 0.82 -0.0
4,887,630 - IAI46_22905 0.82 +0.3
4,887,742 + IAI46_22905 0.86 -0.1
4,887,742 + IAI46_22905 0.86 +0.6
4,887,742 + IAI46_22905 0.86 -0.2
4,887,742 + IAI46_22905 0.86 -0.8
4,887,743 - IAI46_22905 0.86 +0.2
4,887,776 + IAI46_22905 0.87 -0.0
4,887,776 + IAI46_22905 0.87 -0.9
4,887,776 + IAI46_22905 0.87 +0.1
4,887,776 + IAI46_22905 0.87 +0.3
4,887,777 - IAI46_22905 0.87 -0.2
4,887,777 - IAI46_22905 0.87 +0.2
4,887,777 - IAI46_22905 0.87 +0.5
4,887,777 - IAI46_22905 0.87 -0.5
4,887,777 - IAI46_22905 0.87 +0.6
4,887,878 + -0.7
4,887,878 + +0.0
4,887,878 + -0.0
4,887,879 - -0.1
4,887,968 - +0.9
4,887,968 - +0.2
4,887,968 - +0.4
4,888,003 + +0.0
4,888,004 - -1.3
4,888,094 - -0.1
4,888,127 - +0.1
4,888,148 + +0.0
4,888,271 - +0.5
4,888,329 + -0.7
4,888,353 + +1.2
4,888,371 + +0.3
4,888,371 + +1.4
4,888,372 - +0.2
4,888,383 + +0.6
4,888,384 - +0.3
4,888,384 - -0.7
4,888,393 + +1.0
4,888,394 - +0.2
4,888,421 + -0.7
4,888,421 + -1.5
4,888,436 - +0.8
4,888,509 - IAI46_22910 0.13 +0.2
4,888,641 + IAI46_22910 0.25 -0.5
4,888,641 + IAI46_22910 0.25 +1.2
4,888,642 - IAI46_22910 0.25 +0.1
4,888,642 - IAI46_22910 0.25 +0.1
4,888,693 + IAI46_22910 0.30 +0.2
4,888,720 + IAI46_22910 0.33 -0.1
4,888,720 + IAI46_22910 0.33 +0.6
4,888,720 + IAI46_22910 0.33 +1.0
4,888,720 + IAI46_22910 0.33 -0.6
4,888,720 + IAI46_22910 0.33 +0.5
4,888,720 + IAI46_22910 0.33 +0.3
4,888,720 + IAI46_22910 0.33 +0.4
4,888,720 + IAI46_22910 0.33 -0.1
4,888,721 - IAI46_22910 0.33 +0.2
4,888,721 - IAI46_22910 0.33 -2.1
4,888,722 + IAI46_22910 0.33 -0.0
4,888,722 + IAI46_22910 0.33 +0.2
4,888,756 + IAI46_22910 0.36 -0.1
4,888,757 - IAI46_22910 0.36 +0.0
4,888,765 + IAI46_22910 0.37 +0.2
4,888,781 + IAI46_22910 0.39 -1.2
4,888,781 + IAI46_22910 0.39 -0.3
4,888,782 - IAI46_22910 0.39 -0.2
4,888,782 - IAI46_22910 0.39 -0.0
4,888,784 + IAI46_22910 0.39 -0.7
4,888,785 - IAI46_22910 0.39 +1.2
4,888,785 - IAI46_22910 0.39 +0.4
4,888,845 - IAI46_22910 0.45 -0.2
4,888,867 + IAI46_22910 0.47 -0.5
4,889,097 + IAI46_22910 0.69 +0.4
4,889,104 - IAI46_22910 0.69 +0.6
4,889,218 - IAI46_22910 0.80 -0.3
4,889,218 - IAI46_22910 0.80 +0.3
4,889,313 + IAI46_22910 0.89 -0.4
4,889,313 + IAI46_22910 0.89 -0.3
4,889,314 - IAI46_22910 0.89 -0.2
4,889,314 - IAI46_22910 0.89 -0.0
4,889,425 + -0.2
4,889,426 - +0.1
4,889,464 - +0.3
4,889,474 + -0.1
4,889,475 - -1.5
4,889,581 + IAI46_22915 0.22 +0.2
4,889,582 - IAI46_22915 0.22 +0.1
4,889,611 + IAI46_22915 0.27 -0.3
4,889,611 + IAI46_22915 0.27 +0.1
4,889,686 + IAI46_22915 0.41 -0.3
4,889,688 + IAI46_22915 0.41 +0.8
4,889,688 + IAI46_22915 0.41 +0.3
4,889,688 + IAI46_22915 0.41 +1.4
4,889,688 + IAI46_22915 0.41 +0.7
4,889,689 - IAI46_22915 0.41 +0.4
4,889,689 - IAI46_22915 0.41 -0.1
4,889,689 - IAI46_22915 0.41 +0.7
4,889,692 + IAI46_22915 0.42 +0.3
4,889,692 + IAI46_22915 0.42 +0.1
4,889,693 - IAI46_22915 0.42 -1.0
4,889,693 - IAI46_22915 0.42 -0.6
4,889,693 - IAI46_22915 0.42 -0.5
4,889,693 - IAI46_22915 0.42 -0.1
4,889,693 - IAI46_22915 0.42 -0.4
4,889,719 + IAI46_22915 0.47 -0.4
4,889,719 + IAI46_22915 0.47 +0.3
4,889,719 + IAI46_22915 0.47 -0.1
4,889,719 + IAI46_22915 0.47 -0.1
4,889,720 - IAI46_22915 0.47 +1.0
4,889,741 + IAI46_22915 0.51 -1.6
4,889,790 + IAI46_22915 0.59 -0.4
4,889,790 + IAI46_22915 0.59 +0.5
4,889,791 - IAI46_22915 0.60 +0.3
4,889,799 + IAI46_22915 0.61 +1.0
4,889,800 - IAI46_22915 0.61 -0.5
4,889,911 - IAI46_22915 0.81 -0.9
4,889,974 - +0.5
4,890,037 + +0.7
4,890,037 + -0.3
4,890,054 + +0.2
4,890,055 - -0.7
4,890,063 + +0.7
4,890,168 + -0.3
4,890,169 - -0.1
4,890,169 - -0.3
4,890,181 - +0.3
4,890,183 - +0.6
4,890,184 + +1.0
4,890,184 + +1.0
4,890,184 + -0.9
4,890,184 + -0.1
4,890,185 - -0.0
4,890,185 - +1.5
4,890,185 - +0.6
4,890,191 - +0.3
4,890,245 - IAI46_22920 0.16 +0.4
4,890,245 - IAI46_22920 0.16 +0.1
4,890,263 + IAI46_22920 0.21 -0.1
4,890,264 - IAI46_22920 0.21 -0.7
4,890,265 + IAI46_22920 0.21 +0.6
4,890,265 + IAI46_22920 0.21 +1.3
4,890,265 + IAI46_22920 0.21 -1.3
4,890,265 + IAI46_22920 0.21 +0.4
4,890,265 + IAI46_22920 0.21 -0.5
4,890,305 + IAI46_22920 0.33 +0.3
4,890,364 - IAI46_22920 0.49 +0.2
4,890,417 + IAI46_22920 0.64 +0.3

Or see this region's nucleotide sequence