Strain Fitness in Serratia liquefaciens MT49 around IAI46_21740

Experiment: Cobalt chloride 60 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_21735 and IAI46_21740 are separated by 108 nucleotidesIAI46_21740 and IAI46_21745 are separated by 20 nucleotides IAI46_21735: IAI46_21735 - LysR family transcriptional regulator, at 4,620,764 to 4,621,684 _21735 IAI46_21740: IAI46_21740 - NAD(P)-dependent alcohol dehydrogenase, at 4,621,793 to 4,622,821 _21740 IAI46_21745: IAI46_21745 - AraC family transcriptional regulator, at 4,622,842 to 4,623,759 _21745 Position (kb) 4621 4622 4623Strain fitness (log2 ratio) -2 -1 0 1 2at 4620.817 kb on + strandat 4620.960 kb on - strand, within IAI46_21735at 4621.023 kb on - strand, within IAI46_21735at 4621.104 kb on + strand, within IAI46_21735at 4621.104 kb on + strand, within IAI46_21735at 4621.104 kb on + strand, within IAI46_21735at 4621.105 kb on - strand, within IAI46_21735at 4621.105 kb on - strand, within IAI46_21735at 4621.168 kb on - strand, within IAI46_21735at 4621.168 kb on - strand, within IAI46_21735at 4621.192 kb on + strand, within IAI46_21735at 4621.343 kb on - strand, within IAI46_21735at 4621.450 kb on + strand, within IAI46_21735at 4621.454 kb on + strand, within IAI46_21735at 4621.455 kb on - strand, within IAI46_21735at 4621.455 kb on - strand, within IAI46_21735at 4621.485 kb on + strand, within IAI46_21735at 4621.655 kb on + strandat 4621.743 kb on - strandat 4621.752 kb on - strandat 4621.754 kb on + strandat 4621.755 kb on - strandat 4621.771 kb on - strandat 4621.867 kb on - strandat 4621.959 kb on + strand, within IAI46_21740at 4621.959 kb on + strand, within IAI46_21740at 4621.960 kb on - strand, within IAI46_21740at 4622.102 kb on + strand, within IAI46_21740at 4622.102 kb on + strand, within IAI46_21740at 4622.103 kb on - strand, within IAI46_21740at 4622.103 kb on - strand, within IAI46_21740at 4622.107 kb on + strand, within IAI46_21740at 4622.108 kb on - strand, within IAI46_21740at 4622.155 kb on + strand, within IAI46_21740at 4622.168 kb on + strand, within IAI46_21740at 4622.169 kb on - strand, within IAI46_21740at 4622.313 kb on + strand, within IAI46_21740at 4622.313 kb on + strand, within IAI46_21740at 4622.378 kb on + strand, within IAI46_21740at 4622.378 kb on + strand, within IAI46_21740at 4622.378 kb on + strand, within IAI46_21740at 4622.378 kb on + strand, within IAI46_21740at 4622.378 kb on + strand, within IAI46_21740at 4622.378 kb on + strand, within IAI46_21740at 4622.378 kb on + strand, within IAI46_21740at 4622.379 kb on - strand, within IAI46_21740at 4622.379 kb on - strand, within IAI46_21740at 4622.379 kb on - strand, within IAI46_21740at 4622.379 kb on - strand, within IAI46_21740at 4622.379 kb on - strand, within IAI46_21740at 4622.379 kb on - strand, within IAI46_21740at 4622.379 kb on - strand, within IAI46_21740at 4622.379 kb on - strand, within IAI46_21740at 4622.382 kb on + strand, within IAI46_21740at 4622.382 kb on + strand, within IAI46_21740at 4622.382 kb on + strand, within IAI46_21740at 4622.382 kb on + strand, within IAI46_21740at 4622.383 kb on - strand, within IAI46_21740at 4622.383 kb on - strand, within IAI46_21740at 4622.383 kb on - strand, within IAI46_21740at 4622.383 kb on - strand, within IAI46_21740at 4622.477 kb on + strand, within IAI46_21740at 4622.477 kb on + strand, within IAI46_21740at 4622.478 kb on - strand, within IAI46_21740at 4622.534 kb on - strand, within IAI46_21740at 4622.713 kb on + strand, within IAI46_21740at 4622.721 kb on + strandat 4622.722 kb on - strandat 4622.857 kb on + strandat 4622.952 kb on - strand, within IAI46_21745at 4622.995 kb on + strand, within IAI46_21745at 4622.996 kb on - strand, within IAI46_21745at 4622.996 kb on - strand, within IAI46_21745at 4622.996 kb on - strand, within IAI46_21745at 4623.027 kb on - strand, within IAI46_21745at 4623.038 kb on + strand, within IAI46_21745at 4623.038 kb on + strand, within IAI46_21745at 4623.038 kb on + strand, within IAI46_21745at 4623.039 kb on - strand, within IAI46_21745at 4623.039 kb on - strand, within IAI46_21745at 4623.039 kb on - strand, within IAI46_21745at 4623.099 kb on + strand, within IAI46_21745at 4623.099 kb on + strand, within IAI46_21745at 4623.099 kb on + strand, within IAI46_21745at 4623.099 kb on + strand, within IAI46_21745at 4623.100 kb on - strand, within IAI46_21745at 4623.100 kb on - strand, within IAI46_21745at 4623.100 kb on - strand, within IAI46_21745at 4623.100 kb on - strand, within IAI46_21745at 4623.100 kb on - strand, within IAI46_21745at 4623.249 kb on - strand, within IAI46_21745at 4623.262 kb on + strand, within IAI46_21745at 4623.263 kb on - strand, within IAI46_21745at 4623.533 kb on + strand, within IAI46_21745at 4623.533 kb on + strand, within IAI46_21745at 4623.534 kb on - strand, within IAI46_21745at 4623.534 kb on - strand, within IAI46_21745at 4623.534 kb on - strand, within IAI46_21745at 4623.548 kb on + strand, within IAI46_21745at 4623.548 kb on + strand, within IAI46_21745at 4623.548 kb on + strand, within IAI46_21745at 4623.548 kb on + strand, within IAI46_21745at 4623.549 kb on - strand, within IAI46_21745at 4623.572 kb on + strand, within IAI46_21745at 4623.617 kb on + strand, within IAI46_21745at 4623.617 kb on + strand, within IAI46_21745at 4623.617 kb on + strand, within IAI46_21745at 4623.617 kb on + strand, within IAI46_21745at 4623.618 kb on - strand, within IAI46_21745at 4623.618 kb on - strand, within IAI46_21745at 4623.690 kb on - strandat 4623.690 kb on - strandat 4623.774 kb on - strandat 4623.779 kb on - strandat 4623.795 kb on - strandat 4623.799 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 60 uM, anaerobic
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4,620,817 + +0.4
4,620,960 - IAI46_21735 0.21 -0.4
4,621,023 - IAI46_21735 0.28 -0.4
4,621,104 + IAI46_21735 0.37 +1.2
4,621,104 + IAI46_21735 0.37 +0.6
4,621,104 + IAI46_21735 0.37 -1.4
4,621,105 - IAI46_21735 0.37 -0.1
4,621,105 - IAI46_21735 0.37 +1.0
4,621,168 - IAI46_21735 0.44 +0.6
4,621,168 - IAI46_21735 0.44 -0.1
4,621,192 + IAI46_21735 0.46 -1.0
4,621,343 - IAI46_21735 0.63 +0.1
4,621,450 + IAI46_21735 0.74 -0.0
4,621,454 + IAI46_21735 0.75 +2.3
4,621,455 - IAI46_21735 0.75 +0.4
4,621,455 - IAI46_21735 0.75 -0.7
4,621,485 + IAI46_21735 0.78 -0.1
4,621,655 + -0.0
4,621,743 - -0.2
4,621,752 - -0.5
4,621,754 + +0.2
4,621,755 - +0.0
4,621,771 - +0.4
4,621,867 - -0.8
4,621,959 + IAI46_21740 0.16 +0.1
4,621,959 + IAI46_21740 0.16 +0.3
4,621,960 - IAI46_21740 0.16 +0.4
4,622,102 + IAI46_21740 0.30 +0.6
4,622,102 + IAI46_21740 0.30 +0.9
4,622,103 - IAI46_21740 0.30 -0.9
4,622,103 - IAI46_21740 0.30 -0.2
4,622,107 + IAI46_21740 0.31 +0.4
4,622,108 - IAI46_21740 0.31 -0.3
4,622,155 + IAI46_21740 0.35 -0.5
4,622,168 + IAI46_21740 0.36 +0.0
4,622,169 - IAI46_21740 0.37 -0.3
4,622,313 + IAI46_21740 0.51 -0.2
4,622,313 + IAI46_21740 0.51 -0.4
4,622,378 + IAI46_21740 0.57 +0.5
4,622,378 + IAI46_21740 0.57 +1.0
4,622,378 + IAI46_21740 0.57 +0.2
4,622,378 + IAI46_21740 0.57 +0.6
4,622,378 + IAI46_21740 0.57 +0.3
4,622,378 + IAI46_21740 0.57 +1.2
4,622,378 + IAI46_21740 0.57 +0.0
4,622,379 - IAI46_21740 0.57 -0.3
4,622,379 - IAI46_21740 0.57 +0.1
4,622,379 - IAI46_21740 0.57 +0.9
4,622,379 - IAI46_21740 0.57 +0.3
4,622,379 - IAI46_21740 0.57 +0.2
4,622,379 - IAI46_21740 0.57 +0.3
4,622,379 - IAI46_21740 0.57 -0.2
4,622,379 - IAI46_21740 0.57 +1.6
4,622,382 + IAI46_21740 0.57 -1.3
4,622,382 + IAI46_21740 0.57 -0.3
4,622,382 + IAI46_21740 0.57 -1.8
4,622,382 + IAI46_21740 0.57 +0.3
4,622,383 - IAI46_21740 0.57 -0.6
4,622,383 - IAI46_21740 0.57 -0.6
4,622,383 - IAI46_21740 0.57 +0.1
4,622,383 - IAI46_21740 0.57 -0.4
4,622,477 + IAI46_21740 0.66 +0.2
4,622,477 + IAI46_21740 0.66 +1.1
4,622,478 - IAI46_21740 0.67 +1.6
4,622,534 - IAI46_21740 0.72 +0.2
4,622,713 + IAI46_21740 0.89 -0.9
4,622,721 + -0.5
4,622,722 - -1.3
4,622,857 + +0.4
4,622,952 - IAI46_21745 0.12 -0.0
4,622,995 + IAI46_21745 0.17 +0.9
4,622,996 - IAI46_21745 0.17 +0.7
4,622,996 - IAI46_21745 0.17 +0.1
4,622,996 - IAI46_21745 0.17 -0.1
4,623,027 - IAI46_21745 0.20 +0.2
4,623,038 + IAI46_21745 0.21 -0.6
4,623,038 + IAI46_21745 0.21 +0.3
4,623,038 + IAI46_21745 0.21 -0.6
4,623,039 - IAI46_21745 0.21 +1.4
4,623,039 - IAI46_21745 0.21 +0.1
4,623,039 - IAI46_21745 0.21 -0.2
4,623,099 + IAI46_21745 0.28 +0.9
4,623,099 + IAI46_21745 0.28 +0.9
4,623,099 + IAI46_21745 0.28 +0.6
4,623,099 + IAI46_21745 0.28 -0.3
4,623,100 - IAI46_21745 0.28 +0.8
4,623,100 - IAI46_21745 0.28 -0.4
4,623,100 - IAI46_21745 0.28 +0.7
4,623,100 - IAI46_21745 0.28 -0.7
4,623,100 - IAI46_21745 0.28 +0.5
4,623,249 - IAI46_21745 0.44 +0.4
4,623,262 + IAI46_21745 0.46 +0.1
4,623,263 - IAI46_21745 0.46 +0.3
4,623,533 + IAI46_21745 0.75 -0.7
4,623,533 + IAI46_21745 0.75 -0.2
4,623,534 - IAI46_21745 0.75 +1.2
4,623,534 - IAI46_21745 0.75 +0.2
4,623,534 - IAI46_21745 0.75 -0.3
4,623,548 + IAI46_21745 0.77 +2.2
4,623,548 + IAI46_21745 0.77 -0.2
4,623,548 + IAI46_21745 0.77 +0.7
4,623,548 + IAI46_21745 0.77 -0.1
4,623,549 - IAI46_21745 0.77 -0.2
4,623,572 + IAI46_21745 0.80 -0.3
4,623,617 + IAI46_21745 0.84 +0.8
4,623,617 + IAI46_21745 0.84 +0.6
4,623,617 + IAI46_21745 0.84 +0.1
4,623,617 + IAI46_21745 0.84 -0.0
4,623,618 - IAI46_21745 0.85 -0.1
4,623,618 - IAI46_21745 0.85 +0.7
4,623,690 - +0.7
4,623,690 - -0.3
4,623,774 - -0.9
4,623,779 - +0.9
4,623,795 - +0.2
4,623,799 - +0.2

Or see this region's nucleotide sequence