Experiment: Cobalt chloride 60 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_21220 and IAI46_21225 overlap by 1 nucleotides IAI46_21225 and IAI46_21230 are separated by 35 nucleotides
IAI46_21220: IAI46_21220 - polynucleotide adenylyltransferase PcnB, at 4,496,442 to 4,497,992
_21220
IAI46_21225: IAI46_21225 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase, at 4,497,992 to 4,498,483
_21225
IAI46_21230: IAI46_21230 - two-component system sensor histidine kinase QseC, at 4,498,519 to 4,499,877
_21230
Position (kb) 4497
4498
4499 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4497.099 kb on + strand, within IAI46_21220 at 4497.100 kb on - strand, within IAI46_21220 at 4497.133 kb on - strand, within IAI46_21220 at 4497.381 kb on + strand, within IAI46_21220 at 4497.381 kb on + strand, within IAI46_21220 at 4497.382 kb on - strand, within IAI46_21220 at 4497.400 kb on - strand, within IAI46_21220 at 4497.400 kb on - strand, within IAI46_21220 at 4497.473 kb on + strand, within IAI46_21220 at 4497.504 kb on + strand, within IAI46_21220 at 4497.504 kb on + strand, within IAI46_21220 at 4497.554 kb on + strand, within IAI46_21220 at 4497.554 kb on + strand, within IAI46_21220 at 4497.555 kb on - strand, within IAI46_21220 at 4497.555 kb on - strand, within IAI46_21220 at 4497.618 kb on + strand, within IAI46_21220 at 4497.618 kb on + strand, within IAI46_21220 at 4497.619 kb on - strand, within IAI46_21220 at 4497.619 kb on - strand, within IAI46_21220 at 4497.692 kb on + strand, within IAI46_21220 at 4497.795 kb on + strand, within IAI46_21220 at 4497.912 kb on - strand at 4497.990 kb on + strand at 4497.990 kb on + strand at 4498.004 kb on + strand at 4498.472 kb on - strand at 4498.472 kb on - strand at 4498.481 kb on + strand at 4498.507 kb on + strand at 4498.508 kb on - strand at 4498.508 kb on - strand at 4498.509 kb on + strand at 4498.509 kb on + strand at 4498.509 kb on + strand at 4498.509 kb on + strand at 4498.509 kb on + strand at 4498.510 kb on - strand at 4498.510 kb on - strand at 4498.606 kb on + strand at 4498.607 kb on - strand at 4498.607 kb on - strand at 4498.859 kb on + strand, within IAI46_21230 at 4498.860 kb on - strand, within IAI46_21230 at 4499.178 kb on + strand, within IAI46_21230 at 4499.179 kb on - strand, within IAI46_21230 at 4499.179 kb on - strand, within IAI46_21230 at 4499.229 kb on + strand, within IAI46_21230 at 4499.230 kb on - strand, within IAI46_21230 at 4499.233 kb on + strand, within IAI46_21230 at 4499.234 kb on - strand, within IAI46_21230 at 4499.418 kb on - strand, within IAI46_21230
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 60 uM, anaerobic remove 4,497,099 + IAI46_21220 0.42 +0.1 4,497,100 - IAI46_21220 0.42 -1.0 4,497,133 - IAI46_21220 0.45 +1.4 4,497,381 + IAI46_21220 0.61 +0.5 4,497,381 + IAI46_21220 0.61 -0.5 4,497,382 - IAI46_21220 0.61 -0.3 4,497,400 - IAI46_21220 0.62 -0.4 4,497,400 - IAI46_21220 0.62 +0.2 4,497,473 + IAI46_21220 0.66 +0.1 4,497,504 + IAI46_21220 0.68 +0.2 4,497,504 + IAI46_21220 0.68 -0.8 4,497,554 + IAI46_21220 0.72 +0.3 4,497,554 + IAI46_21220 0.72 +0.4 4,497,555 - IAI46_21220 0.72 +0.3 4,497,555 - IAI46_21220 0.72 -0.4 4,497,618 + IAI46_21220 0.76 -0.5 4,497,618 + IAI46_21220 0.76 +0.0 4,497,619 - IAI46_21220 0.76 -1.8 4,497,619 - IAI46_21220 0.76 -0.7 4,497,692 + IAI46_21220 0.81 -0.4 4,497,795 + IAI46_21220 0.87 +2.4 4,497,912 - -1.2 4,497,990 + +0.1 4,497,990 + +0.1 4,498,004 + +1.1 4,498,472 - -0.5 4,498,472 - -0.7 4,498,481 + +0.2 4,498,507 + +0.3 4,498,508 - +0.4 4,498,508 - +0.7 4,498,509 + +0.9 4,498,509 + +0.3 4,498,509 + -0.1 4,498,509 + +0.6 4,498,509 + +0.3 4,498,510 - +1.7 4,498,510 - +0.3 4,498,606 + +1.2 4,498,607 - +0.5 4,498,607 - +1.7 4,498,859 + IAI46_21230 0.25 -0.1 4,498,860 - IAI46_21230 0.25 -0.3 4,499,178 + IAI46_21230 0.48 -1.1 4,499,179 - IAI46_21230 0.49 +0.3 4,499,179 - IAI46_21230 0.49 -0.1 4,499,229 + IAI46_21230 0.52 -0.5 4,499,230 - IAI46_21230 0.52 +1.0 4,499,233 + IAI46_21230 0.53 +0.3 4,499,234 - IAI46_21230 0.53 +2.1 4,499,418 - IAI46_21230 0.66 +0.9
Or see this region's nucleotide sequence