Strain Fitness in Serratia liquefaciens MT49 around IAI46_21010

Experiment: Cobalt chloride 60 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_21005 and IAI46_21010 are separated by 116 nucleotidesIAI46_21010 and IAI46_21015 are separated by 71 nucleotides IAI46_21005: IAI46_21005 - class II fructose-bisphosphate aldolase, at 4,445,539 to 4,446,618 _21005 IAI46_21010: IAI46_21010 - phosphoglycerate kinase, at 4,446,735 to 4,447,898 _21010 IAI46_21015: IAI46_21015 - erythrose-4-phosphate dehydrogenase, at 4,447,970 to 4,448,986 _21015 Position (kb) 4446 4447 4448Strain fitness (log2 ratio) -2 -1 0 1at 4446.656 kb on - strandat 4446.656 kb on - strandat 4447.969 kb on - strandat 4447.972 kb on - strandat 4447.972 kb on - strandat 4448.003 kb on - strandat 4448.163 kb on - strand, within IAI46_21015at 4448.276 kb on + strand, within IAI46_21015at 4448.276 kb on + strand, within IAI46_21015at 4448.276 kb on + strand, within IAI46_21015at 4448.277 kb on - strand, within IAI46_21015at 4448.329 kb on + strand, within IAI46_21015at 4448.333 kb on - strand, within IAI46_21015at 4448.414 kb on + strand, within IAI46_21015at 4448.415 kb on - strand, within IAI46_21015at 4448.415 kb on - strand, within IAI46_21015at 4448.475 kb on + strand, within IAI46_21015at 4448.475 kb on + strand, within IAI46_21015at 4448.475 kb on + strand, within IAI46_21015at 4448.476 kb on - strand, within IAI46_21015at 4448.476 kb on - strand, within IAI46_21015at 4448.507 kb on - strand, within IAI46_21015at 4448.679 kb on + strand, within IAI46_21015at 4448.680 kb on - strand, within IAI46_21015at 4448.838 kb on + strand, within IAI46_21015at 4448.838 kb on + strand, within IAI46_21015at 4448.839 kb on - strand, within IAI46_21015

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 60 uM, anaerobic
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4,446,656 - +0.5
4,446,656 - -0.8
4,447,969 - -0.3
4,447,972 - -2.3
4,447,972 - +0.3
4,448,003 - -0.1
4,448,163 - IAI46_21015 0.19 +0.4
4,448,276 + IAI46_21015 0.30 +0.4
4,448,276 + IAI46_21015 0.30 -0.4
4,448,276 + IAI46_21015 0.30 -0.2
4,448,277 - IAI46_21015 0.30 -0.8
4,448,329 + IAI46_21015 0.35 -0.5
4,448,333 - IAI46_21015 0.36 +1.2
4,448,414 + IAI46_21015 0.44 +0.1
4,448,415 - IAI46_21015 0.44 -1.4
4,448,415 - IAI46_21015 0.44 +0.5
4,448,475 + IAI46_21015 0.50 +0.2
4,448,475 + IAI46_21015 0.50 -0.7
4,448,475 + IAI46_21015 0.50 -0.1
4,448,476 - IAI46_21015 0.50 -1.8
4,448,476 - IAI46_21015 0.50 +0.1
4,448,507 - IAI46_21015 0.53 -0.6
4,448,679 + IAI46_21015 0.70 -0.3
4,448,680 - IAI46_21015 0.70 -0.4
4,448,838 + IAI46_21015 0.85 +0.4
4,448,838 + IAI46_21015 0.85 +1.1
4,448,839 - IAI46_21015 0.85 +0.7

Or see this region's nucleotide sequence