Strain Fitness in Serratia liquefaciens MT49 around IAI46_20980

Experiment: Cobalt chloride 60 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_20970 and IAI46_20975 are separated by 1 nucleotidesIAI46_20975 and IAI46_20980 overlap by 7 nucleotidesIAI46_20980 and IAI46_20985 are separated by 175 nucleotides IAI46_20970: IAI46_20970 - 3-keto-L-gulonate-6-phosphate decarboxylase UlaD, at 4,439,008 to 4,439,664 _20970 IAI46_20975: IAI46_20975 - L-ribulose-5-phosphate 3-epimerase, at 4,439,666 to 4,440,526 _20975 IAI46_20980: IAI46_20980 - L-ribulose-5-phosphate 4-epimerase, at 4,440,520 to 4,441,221 _20980 IAI46_20985: IAI46_20985 - RluA family pseudouridine synthase, at 4,441,397 to 4,442,095 _20985 Position (kb) 4440 4441 4442Strain fitness (log2 ratio) -2 -1 0 1 2at 4440.026 kb on + strand, within IAI46_20975at 4440.071 kb on - strand, within IAI46_20975at 4440.071 kb on - strand, within IAI46_20975at 4440.143 kb on - strand, within IAI46_20975at 4440.305 kb on + strand, within IAI46_20975at 4440.305 kb on + strand, within IAI46_20975at 4440.306 kb on - strand, within IAI46_20975at 4440.403 kb on + strand, within IAI46_20975at 4440.403 kb on + strand, within IAI46_20975at 4440.403 kb on + strand, within IAI46_20975at 4440.403 kb on + strand, within IAI46_20975at 4440.403 kb on + strand, within IAI46_20975at 4440.404 kb on - strand, within IAI46_20975at 4440.404 kb on - strand, within IAI46_20975at 4440.404 kb on - strand, within IAI46_20975at 4440.407 kb on + strand, within IAI46_20975at 4440.524 kb on + strandat 4440.524 kb on + strandat 4440.541 kb on - strandat 4440.566 kb on + strandat 4440.566 kb on + strandat 4440.566 kb on + strandat 4440.566 kb on + strandat 4440.567 kb on - strandat 4440.668 kb on - strand, within IAI46_20980at 4440.776 kb on - strand, within IAI46_20980at 4440.829 kb on - strand, within IAI46_20980at 4440.886 kb on + strand, within IAI46_20980at 4440.893 kb on - strand, within IAI46_20980at 4440.893 kb on - strand, within IAI46_20980at 4440.893 kb on - strand, within IAI46_20980at 4440.946 kb on + strand, within IAI46_20980at 4440.946 kb on + strand, within IAI46_20980at 4440.946 kb on + strand, within IAI46_20980at 4440.946 kb on + strand, within IAI46_20980at 4441.022 kb on + strand, within IAI46_20980at 4441.108 kb on + strand, within IAI46_20980at 4441.180 kb on + strandat 4441.181 kb on - strandat 4441.181 kb on - strandat 4441.208 kb on - strandat 4441.210 kb on + strandat 4441.211 kb on - strandat 4441.211 kb on - strandat 4441.242 kb on - strandat 4441.363 kb on - strandat 4441.402 kb on + strandat 4441.402 kb on + strandat 4441.402 kb on + strandat 4441.403 kb on - strandat 4441.403 kb on - strandat 4441.447 kb on - strandat 4441.447 kb on - strandat 4441.457 kb on + strandat 4441.458 kb on - strandat 4441.487 kb on - strand, within IAI46_20985at 4441.504 kb on - strand, within IAI46_20985at 4441.542 kb on + strand, within IAI46_20985at 4441.543 kb on - strand, within IAI46_20985at 4441.563 kb on + strand, within IAI46_20985at 4441.563 kb on + strand, within IAI46_20985at 4441.564 kb on - strand, within IAI46_20985at 4441.576 kb on + strand, within IAI46_20985at 4441.576 kb on + strand, within IAI46_20985at 4441.577 kb on - strand, within IAI46_20985at 4441.577 kb on - strand, within IAI46_20985at 4441.631 kb on - strand, within IAI46_20985at 4441.633 kb on + strand, within IAI46_20985at 4441.634 kb on - strand, within IAI46_20985at 4441.691 kb on + strand, within IAI46_20985at 4441.691 kb on + strand, within IAI46_20985at 4441.692 kb on - strand, within IAI46_20985at 4441.737 kb on + strand, within IAI46_20985at 4441.737 kb on + strand, within IAI46_20985at 4441.737 kb on + strand, within IAI46_20985at 4441.738 kb on - strand, within IAI46_20985at 4441.738 kb on - strand, within IAI46_20985at 4441.738 kb on - strand, within IAI46_20985at 4441.738 kb on - strand, within IAI46_20985at 4441.884 kb on + strand, within IAI46_20985at 4441.891 kb on - strand, within IAI46_20985at 4441.891 kb on - strand, within IAI46_20985at 4441.925 kb on - strand, within IAI46_20985at 4441.951 kb on + strand, within IAI46_20985at 4441.952 kb on - strand, within IAI46_20985at 4441.952 kb on - strand, within IAI46_20985at 4441.971 kb on - strand, within IAI46_20985at 4442.104 kb on + strandat 4442.174 kb on + strandat 4442.174 kb on + strandat 4442.175 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 60 uM, anaerobic
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4,440,026 + IAI46_20975 0.42 +0.2
4,440,071 - IAI46_20975 0.47 -1.3
4,440,071 - IAI46_20975 0.47 +0.0
4,440,143 - IAI46_20975 0.55 -0.4
4,440,305 + IAI46_20975 0.74 -0.3
4,440,305 + IAI46_20975 0.74 -2.0
4,440,306 - IAI46_20975 0.74 +0.3
4,440,403 + IAI46_20975 0.86 -0.1
4,440,403 + IAI46_20975 0.86 -1.4
4,440,403 + IAI46_20975 0.86 +0.3
4,440,403 + IAI46_20975 0.86 -0.4
4,440,403 + IAI46_20975 0.86 +0.1
4,440,404 - IAI46_20975 0.86 +1.0
4,440,404 - IAI46_20975 0.86 +0.1
4,440,404 - IAI46_20975 0.86 +0.7
4,440,407 + IAI46_20975 0.86 +0.6
4,440,524 + +0.4
4,440,524 + +1.0
4,440,541 - +0.3
4,440,566 + -0.1
4,440,566 + +0.4
4,440,566 + +0.6
4,440,566 + +1.1
4,440,567 - +2.3
4,440,668 - IAI46_20980 0.21 +0.2
4,440,776 - IAI46_20980 0.36 +0.0
4,440,829 - IAI46_20980 0.44 +0.3
4,440,886 + IAI46_20980 0.52 -0.9
4,440,893 - IAI46_20980 0.53 +0.2
4,440,893 - IAI46_20980 0.53 -0.1
4,440,893 - IAI46_20980 0.53 +0.6
4,440,946 + IAI46_20980 0.61 -0.2
4,440,946 + IAI46_20980 0.61 -0.0
4,440,946 + IAI46_20980 0.61 -0.0
4,440,946 + IAI46_20980 0.61 -0.9
4,441,022 + IAI46_20980 0.72 -0.5
4,441,108 + IAI46_20980 0.84 +0.1
4,441,180 + +0.5
4,441,181 - -0.0
4,441,181 - +0.3
4,441,208 - +0.6
4,441,210 + -0.2
4,441,211 - -0.1
4,441,211 - +0.4
4,441,242 - -0.9
4,441,363 - -0.8
4,441,402 + +0.9
4,441,402 + -0.3
4,441,402 + +0.5
4,441,403 - +0.0
4,441,403 - -0.2
4,441,447 - -0.0
4,441,447 - +0.1
4,441,457 + +0.6
4,441,458 - +0.5
4,441,487 - IAI46_20985 0.13 -0.1
4,441,504 - IAI46_20985 0.15 +0.7
4,441,542 + IAI46_20985 0.21 +0.7
4,441,543 - IAI46_20985 0.21 -1.2
4,441,563 + IAI46_20985 0.24 +0.1
4,441,563 + IAI46_20985 0.24 -1.1
4,441,564 - IAI46_20985 0.24 -0.1
4,441,576 + IAI46_20985 0.26 -0.0
4,441,576 + IAI46_20985 0.26 -0.7
4,441,577 - IAI46_20985 0.26 +0.0
4,441,577 - IAI46_20985 0.26 -0.8
4,441,631 - IAI46_20985 0.33 +0.4
4,441,633 + IAI46_20985 0.34 +0.6
4,441,634 - IAI46_20985 0.34 +0.4
4,441,691 + IAI46_20985 0.42 +0.1
4,441,691 + IAI46_20985 0.42 -0.1
4,441,692 - IAI46_20985 0.42 -0.2
4,441,737 + IAI46_20985 0.49 -0.2
4,441,737 + IAI46_20985 0.49 +1.1
4,441,737 + IAI46_20985 0.49 +0.5
4,441,738 - IAI46_20985 0.49 -0.6
4,441,738 - IAI46_20985 0.49 -0.2
4,441,738 - IAI46_20985 0.49 +0.5
4,441,738 - IAI46_20985 0.49 -1.0
4,441,884 + IAI46_20985 0.70 -0.3
4,441,891 - IAI46_20985 0.71 +0.6
4,441,891 - IAI46_20985 0.71 -0.8
4,441,925 - IAI46_20985 0.76 -0.4
4,441,951 + IAI46_20985 0.79 -0.3
4,441,952 - IAI46_20985 0.79 +0.2
4,441,952 - IAI46_20985 0.79 +0.1
4,441,971 - IAI46_20985 0.82 -1.1
4,442,104 + +0.0
4,442,174 + +0.2
4,442,174 + -0.5
4,442,175 - -1.1

Or see this region's nucleotide sequence