Strain Fitness in Serratia liquefaciens MT49 around IAI46_20515

Experiment: Cobalt chloride 60 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_20505 and IAI46_20510 are separated by 139 nucleotidesIAI46_20510 and IAI46_20515 are separated by 5 nucleotidesIAI46_20515 and IAI46_20520 are separated by 30 nucleotides IAI46_20505: IAI46_20505 - LacI family DNA-binding transcriptional regulator, at 4,339,379 to 4,340,389 _20505 IAI46_20510: IAI46_20510 - type II toxin-antitoxin system RelE/ParE family toxin, at 4,340,529 to 4,340,872 _20510 IAI46_20515: IAI46_20515 - helix-turn-helix transcriptional regulator, at 4,340,878 to 4,341,180 _20515 IAI46_20520: IAI46_20520 - diaminopimelate decarboxylase, at 4,341,211 to 4,342,473 _20520 Position (kb) 4340 4341 4342Strain fitness (log2 ratio) -1 0 1 2at 4339.973 kb on + strand, within IAI46_20505at 4339.986 kb on + strand, within IAI46_20505at 4339.999 kb on + strand, within IAI46_20505at 4339.999 kb on + strand, within IAI46_20505at 4340.028 kb on - strand, within IAI46_20505at 4340.028 kb on - strand, within IAI46_20505at 4340.219 kb on + strand, within IAI46_20505at 4340.219 kb on + strand, within IAI46_20505at 4340.235 kb on + strand, within IAI46_20505at 4340.235 kb on + strand, within IAI46_20505at 4340.236 kb on - strand, within IAI46_20505at 4340.236 kb on - strand, within IAI46_20505at 4340.239 kb on + strand, within IAI46_20505at 4340.239 kb on + strand, within IAI46_20505at 4340.239 kb on + strand, within IAI46_20505at 4340.239 kb on + strand, within IAI46_20505at 4340.240 kb on - strand, within IAI46_20505at 4340.240 kb on - strand, within IAI46_20505at 4340.240 kb on - strand, within IAI46_20505at 4340.240 kb on - strand, within IAI46_20505at 4340.246 kb on + strand, within IAI46_20505at 4340.246 kb on + strand, within IAI46_20505at 4340.246 kb on + strand, within IAI46_20505at 4340.379 kb on - strandat 4340.379 kb on - strandat 4340.379 kb on - strandat 4340.428 kb on - strandat 4340.471 kb on - strandat 4340.485 kb on - strandat 4340.491 kb on + strandat 4340.491 kb on + strandat 4340.513 kb on - strandat 4340.514 kb on + strandat 4340.572 kb on + strand, within IAI46_20510at 4340.579 kb on - strand, within IAI46_20510at 4340.614 kb on + strand, within IAI46_20510at 4340.685 kb on + strand, within IAI46_20510at 4340.686 kb on - strand, within IAI46_20510at 4340.703 kb on + strand, within IAI46_20510at 4340.704 kb on - strand, within IAI46_20510at 4340.707 kb on + strand, within IAI46_20510at 4340.707 kb on + strand, within IAI46_20510at 4340.708 kb on - strand, within IAI46_20510at 4340.708 kb on - strand, within IAI46_20510at 4340.708 kb on - strand, within IAI46_20510at 4340.789 kb on - strand, within IAI46_20510at 4340.801 kb on - strand, within IAI46_20510at 4340.810 kb on + strand, within IAI46_20510at 4340.853 kb on - strandat 4340.853 kb on - strandat 4340.853 kb on - strandat 4340.853 kb on - strandat 4340.876 kb on - strandat 4340.876 kb on - strandat 4340.876 kb on - strandat 4340.876 kb on - strandat 4341.033 kb on + strand, within IAI46_20515at 4341.103 kb on + strand, within IAI46_20515at 4341.104 kb on - strand, within IAI46_20515at 4341.104 kb on - strand, within IAI46_20515at 4341.105 kb on + strand, within IAI46_20515at 4341.317 kb on + strandat 4341.317 kb on + strandat 4341.317 kb on + strandat 4341.331 kb on - strandat 4341.331 kb on - strandat 4341.368 kb on + strand, within IAI46_20520at 4341.369 kb on - strand, within IAI46_20520at 4341.430 kb on - strand, within IAI46_20520at 4341.524 kb on - strand, within IAI46_20520at 4341.524 kb on - strand, within IAI46_20520at 4341.525 kb on + strand, within IAI46_20520at 4341.525 kb on + strand, within IAI46_20520at 4341.525 kb on + strand, within IAI46_20520at 4341.525 kb on + strand, within IAI46_20520at 4341.525 kb on + strand, within IAI46_20520at 4341.525 kb on + strand, within IAI46_20520at 4341.526 kb on - strand, within IAI46_20520at 4341.526 kb on - strand, within IAI46_20520at 4341.526 kb on - strand, within IAI46_20520at 4341.526 kb on - strand, within IAI46_20520at 4341.526 kb on - strand, within IAI46_20520at 4341.526 kb on - strand, within IAI46_20520at 4341.526 kb on - strand, within IAI46_20520at 4341.526 kb on - strand, within IAI46_20520at 4341.533 kb on + strand, within IAI46_20520at 4341.533 kb on + strand, within IAI46_20520at 4341.533 kb on + strand, within IAI46_20520at 4341.534 kb on - strand, within IAI46_20520at 4341.534 kb on - strand, within IAI46_20520at 4341.542 kb on + strand, within IAI46_20520at 4341.542 kb on + strand, within IAI46_20520at 4341.542 kb on + strand, within IAI46_20520at 4341.543 kb on - strand, within IAI46_20520at 4341.543 kb on - strand, within IAI46_20520at 4341.543 kb on - strand, within IAI46_20520at 4341.543 kb on - strand, within IAI46_20520at 4341.568 kb on - strand, within IAI46_20520at 4341.881 kb on + strand, within IAI46_20520at 4341.882 kb on - strand, within IAI46_20520at 4341.882 kb on - strand, within IAI46_20520at 4341.882 kb on - strand, within IAI46_20520at 4341.898 kb on + strand, within IAI46_20520at 4341.899 kb on - strand, within IAI46_20520at 4341.900 kb on + strand, within IAI46_20520at 4341.900 kb on + strand, within IAI46_20520at 4341.900 kb on + strand, within IAI46_20520at 4341.901 kb on - strand, within IAI46_20520at 4341.901 kb on - strand, within IAI46_20520at 4341.901 kb on - strand, within IAI46_20520at 4341.906 kb on + strand, within IAI46_20520at 4341.906 kb on + strand, within IAI46_20520at 4341.907 kb on - strand, within IAI46_20520at 4341.907 kb on - strand, within IAI46_20520at 4341.962 kb on - strand, within IAI46_20520at 4341.971 kb on + strand, within IAI46_20520at 4341.978 kb on + strand, within IAI46_20520at 4341.979 kb on - strand, within IAI46_20520

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 60 uM, anaerobic
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4,339,973 + IAI46_20505 0.59 +0.9
4,339,986 + IAI46_20505 0.60 -0.2
4,339,999 + IAI46_20505 0.61 +0.0
4,339,999 + IAI46_20505 0.61 +0.3
4,340,028 - IAI46_20505 0.64 +0.1
4,340,028 - IAI46_20505 0.64 -0.4
4,340,219 + IAI46_20505 0.83 +0.3
4,340,219 + IAI46_20505 0.83 -0.1
4,340,235 + IAI46_20505 0.85 +0.1
4,340,235 + IAI46_20505 0.85 -0.2
4,340,236 - IAI46_20505 0.85 +1.5
4,340,236 - IAI46_20505 0.85 -0.1
4,340,239 + IAI46_20505 0.85 -0.1
4,340,239 + IAI46_20505 0.85 +0.2
4,340,239 + IAI46_20505 0.85 -0.6
4,340,239 + IAI46_20505 0.85 +0.3
4,340,240 - IAI46_20505 0.85 +0.2
4,340,240 - IAI46_20505 0.85 +0.5
4,340,240 - IAI46_20505 0.85 +0.3
4,340,240 - IAI46_20505 0.85 +0.2
4,340,246 + IAI46_20505 0.86 +0.7
4,340,246 + IAI46_20505 0.86 +0.2
4,340,246 + IAI46_20505 0.86 +0.0
4,340,379 - -0.4
4,340,379 - -0.8
4,340,379 - +0.6
4,340,428 - +0.3
4,340,471 - +0.1
4,340,485 - +0.6
4,340,491 + +1.1
4,340,491 + +0.9
4,340,513 - -0.3
4,340,514 + +2.7
4,340,572 + IAI46_20510 0.12 +0.3
4,340,579 - IAI46_20510 0.15 -0.0
4,340,614 + IAI46_20510 0.25 +0.7
4,340,685 + IAI46_20510 0.45 -0.8
4,340,686 - IAI46_20510 0.46 -0.0
4,340,703 + IAI46_20510 0.51 +0.3
4,340,704 - IAI46_20510 0.51 -0.2
4,340,707 + IAI46_20510 0.52 +0.1
4,340,707 + IAI46_20510 0.52 -0.1
4,340,708 - IAI46_20510 0.52 +1.6
4,340,708 - IAI46_20510 0.52 -0.0
4,340,708 - IAI46_20510 0.52 -0.8
4,340,789 - IAI46_20510 0.76 +0.2
4,340,801 - IAI46_20510 0.79 +0.2
4,340,810 + IAI46_20510 0.82 -0.1
4,340,853 - -0.3
4,340,853 - +0.1
4,340,853 - +0.6
4,340,853 - -1.4
4,340,876 - +1.7
4,340,876 - -0.3
4,340,876 - -1.0
4,340,876 - -0.7
4,341,033 + IAI46_20515 0.51 +0.1
4,341,103 + IAI46_20515 0.74 +1.0
4,341,104 - IAI46_20515 0.75 +0.4
4,341,104 - IAI46_20515 0.75 +0.3
4,341,105 + IAI46_20515 0.75 +1.2
4,341,317 + +0.3
4,341,317 + +1.1
4,341,317 + +0.3
4,341,331 - +1.4
4,341,331 - +1.1
4,341,368 + IAI46_20520 0.12 +0.3
4,341,369 - IAI46_20520 0.13 -0.9
4,341,430 - IAI46_20520 0.17 +0.4
4,341,524 - IAI46_20520 0.25 +0.1
4,341,524 - IAI46_20520 0.25 -0.3
4,341,525 + IAI46_20520 0.25 +1.6
4,341,525 + IAI46_20520 0.25 -0.2
4,341,525 + IAI46_20520 0.25 -1.6
4,341,525 + IAI46_20520 0.25 +0.6
4,341,525 + IAI46_20520 0.25 -0.0
4,341,525 + IAI46_20520 0.25 +0.5
4,341,526 - IAI46_20520 0.25 +0.0
4,341,526 - IAI46_20520 0.25 -0.3
4,341,526 - IAI46_20520 0.25 -0.4
4,341,526 - IAI46_20520 0.25 -0.6
4,341,526 - IAI46_20520 0.25 +0.6
4,341,526 - IAI46_20520 0.25 -0.3
4,341,526 - IAI46_20520 0.25 -0.2
4,341,526 - IAI46_20520 0.25 +0.2
4,341,533 + IAI46_20520 0.25 +0.4
4,341,533 + IAI46_20520 0.25 +0.7
4,341,533 + IAI46_20520 0.25 -0.5
4,341,534 - IAI46_20520 0.26 -0.1
4,341,534 - IAI46_20520 0.26 +0.1
4,341,542 + IAI46_20520 0.26 +0.7
4,341,542 + IAI46_20520 0.26 -1.0
4,341,542 + IAI46_20520 0.26 -1.0
4,341,543 - IAI46_20520 0.26 +0.7
4,341,543 - IAI46_20520 0.26 +0.0
4,341,543 - IAI46_20520 0.26 +0.6
4,341,543 - IAI46_20520 0.26 -0.2
4,341,568 - IAI46_20520 0.28 -0.8
4,341,881 + IAI46_20520 0.53 +0.7
4,341,882 - IAI46_20520 0.53 -0.6
4,341,882 - IAI46_20520 0.53 -0.4
4,341,882 - IAI46_20520 0.53 +0.6
4,341,898 + IAI46_20520 0.54 +0.2
4,341,899 - IAI46_20520 0.54 +0.9
4,341,900 + IAI46_20520 0.55 +0.8
4,341,900 + IAI46_20520 0.55 -0.3
4,341,900 + IAI46_20520 0.55 +0.5
4,341,901 - IAI46_20520 0.55 +0.4
4,341,901 - IAI46_20520 0.55 +0.2
4,341,901 - IAI46_20520 0.55 +0.1
4,341,906 + IAI46_20520 0.55 +0.7
4,341,906 + IAI46_20520 0.55 -0.9
4,341,907 - IAI46_20520 0.55 -0.0
4,341,907 - IAI46_20520 0.55 -1.2
4,341,962 - IAI46_20520 0.59 -0.1
4,341,971 + IAI46_20520 0.60 -1.4
4,341,978 + IAI46_20520 0.61 +0.9
4,341,979 - IAI46_20520 0.61 -1.3

Or see this region's nucleotide sequence