Experiment: Cobalt chloride 60 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_19275 and IAI46_19280 are separated by 47 nucleotides IAI46_19280 and IAI46_19285 overlap by 11 nucleotides IAI46_19285 and IAI46_19290 are separated by 85 nucleotides
IAI46_19275: IAI46_19275 - flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase, at 4,068,710 to 4,069,831
_19275
IAI46_19280: IAI46_19280 - cytoskeleton protein RodZ, at 4,069,879 to 4,070,856
_19280
IAI46_19285: IAI46_19285 - type IV pilus biogenesis/stability protein PilW, at 4,070,846 to 4,071,595
_19285
IAI46_19290: IAI46_19290 - bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN, at 4,071,681 to 4,072,877
_19290
Position (kb)
4069
4070
4071 Strain fitness (log2 ratio)
-2
-1
0
1 at 4069.934 kb on - strand at 4069.967 kb on - strand at 4070.052 kb on - strand, within IAI46_19280 at 4070.369 kb on - strand, within IAI46_19280 at 4070.655 kb on - strand, within IAI46_19280 at 4070.667 kb on - strand, within IAI46_19280 at 4070.667 kb on - strand, within IAI46_19280 at 4070.851 kb on - strand at 4070.851 kb on - strand at 4070.862 kb on - strand at 4070.862 kb on - strand at 4070.930 kb on - strand, within IAI46_19285 at 4070.973 kb on - strand, within IAI46_19285 at 4071.007 kb on - strand, within IAI46_19285 at 4071.007 kb on - strand, within IAI46_19285 at 4071.011 kb on - strand, within IAI46_19285 at 4071.011 kb on - strand, within IAI46_19285 at 4071.117 kb on - strand, within IAI46_19285 at 4071.117 kb on - strand, within IAI46_19285 at 4071.163 kb on - strand, within IAI46_19285 at 4071.247 kb on - strand, within IAI46_19285 at 4071.247 kb on - strand, within IAI46_19285 at 4071.247 kb on - strand, within IAI46_19285 at 4071.247 kb on - strand, within IAI46_19285 at 4071.247 kb on - strand, within IAI46_19285 at 4071.247 kb on - strand, within IAI46_19285 at 4071.247 kb on - strand, within IAI46_19285 at 4071.277 kb on - strand, within IAI46_19285 at 4071.277 kb on - strand, within IAI46_19285 at 4071.280 kb on + strand, within IAI46_19285 at 4071.370 kb on - strand, within IAI46_19285 at 4071.370 kb on - strand, within IAI46_19285 at 4071.396 kb on + strand, within IAI46_19285 at 4071.469 kb on - strand, within IAI46_19285 at 4071.575 kb on - strand at 4071.674 kb on - strand at 4071.674 kb on - strand at 4071.674 kb on - strand at 4071.674 kb on - strand at 4071.731 kb on + strand at 4071.812 kb on + strand, within IAI46_19290 at 4071.813 kb on - strand, within IAI46_19290 at 4071.819 kb on - strand, within IAI46_19290
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 60 uM, anaerobic remove 4,069,934 - +0.7 4,069,967 - +0.4 4,070,052 - IAI46_19280 0.18 +0.4 4,070,369 - IAI46_19280 0.50 -0.2 4,070,655 - IAI46_19280 0.79 -0.5 4,070,667 - IAI46_19280 0.81 +1.5 4,070,667 - IAI46_19280 0.81 -1.6 4,070,851 - +0.8 4,070,851 - -0.5 4,070,862 - +0.0 4,070,862 - -0.2 4,070,930 - IAI46_19285 0.11 -0.4 4,070,973 - IAI46_19285 0.17 +0.7 4,071,007 - IAI46_19285 0.21 +0.1 4,071,007 - IAI46_19285 0.21 +0.4 4,071,011 - IAI46_19285 0.22 -0.0 4,071,011 - IAI46_19285 0.22 +0.7 4,071,117 - IAI46_19285 0.36 +0.2 4,071,117 - IAI46_19285 0.36 -0.8 4,071,163 - IAI46_19285 0.42 +1.1 4,071,247 - IAI46_19285 0.53 -0.8 4,071,247 - IAI46_19285 0.53 +0.2 4,071,247 - IAI46_19285 0.53 +0.4 4,071,247 - IAI46_19285 0.53 +0.5 4,071,247 - IAI46_19285 0.53 +0.7 4,071,247 - IAI46_19285 0.53 +0.1 4,071,247 - IAI46_19285 0.53 +0.1 4,071,277 - IAI46_19285 0.57 +0.3 4,071,277 - IAI46_19285 0.57 +0.1 4,071,280 + IAI46_19285 0.58 -0.2 4,071,370 - IAI46_19285 0.70 +0.7 4,071,370 - IAI46_19285 0.70 +0.8 4,071,396 + IAI46_19285 0.73 -0.2 4,071,469 - IAI46_19285 0.83 +1.3 4,071,575 - +0.0 4,071,674 - -0.6 4,071,674 - +1.4 4,071,674 - -0.1 4,071,674 - -0.9 4,071,731 + -2.4 4,071,812 + IAI46_19290 0.11 -0.2 4,071,813 - IAI46_19290 0.11 +0.1 4,071,819 - IAI46_19290 0.12 -0.1
Or see this region's nucleotide sequence