Experiment: Cobalt chloride 60 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_16150 and IAI46_16155 are separated by 241 nucleotides IAI46_16155 and IAI46_16160 are separated by 9 nucleotides IAI46_16160 and IAI46_16165 overlap by 23 nucleotides
IAI46_16150: IAI46_16150 - helix-turn-helix domain-containing protein, at 3,386,994 to 3,387,827
_16150
IAI46_16155: IAI46_16155 - 3-oxoacid CoA-transferase subunit A, at 3,388,069 to 3,388,755
_16155
IAI46_16160: IAI46_16160 - CoA transferase subunit B, at 3,388,765 to 3,389,445
_16160
IAI46_16165: IAI46_16165 - 3-oxoadipyl-CoA thiolase, at 3,389,423 to 3,390,625
_16165
Position (kb)
3388
3389
3390 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3387.765 kb on + strand at 3387.766 kb on - strand at 3387.766 kb on - strand at 3387.858 kb on + strand at 3387.860 kb on + strand at 3387.860 kb on + strand at 3387.861 kb on - strand at 3387.861 kb on - strand at 3387.909 kb on + strand at 3387.909 kb on + strand at 3387.909 kb on + strand at 3387.909 kb on + strand at 3387.910 kb on - strand at 3387.910 kb on - strand at 3388.007 kb on + strand at 3388.049 kb on + strand at 3388.050 kb on - strand at 3388.050 kb on - strand at 3388.134 kb on + strand at 3388.134 kb on + strand at 3388.168 kb on + strand, within IAI46_16155 at 3388.168 kb on + strand, within IAI46_16155 at 3388.169 kb on - strand, within IAI46_16155 at 3388.326 kb on - strand, within IAI46_16155 at 3388.326 kb on - strand, within IAI46_16155 at 3388.339 kb on + strand, within IAI46_16155 at 3388.430 kb on - strand, within IAI46_16155 at 3388.498 kb on + strand, within IAI46_16155 at 3388.498 kb on + strand, within IAI46_16155 at 3388.499 kb on - strand, within IAI46_16155 at 3388.577 kb on - strand, within IAI46_16155 at 3388.578 kb on + strand, within IAI46_16155 at 3388.645 kb on - strand, within IAI46_16155 at 3388.690 kb on - strand at 3388.690 kb on - strand at 3388.706 kb on + strand at 3388.754 kb on - strand at 3388.754 kb on - strand at 3388.777 kb on - strand at 3388.777 kb on - strand at 3388.870 kb on + strand, within IAI46_16160 at 3388.871 kb on - strand, within IAI46_16160 at 3388.871 kb on - strand, within IAI46_16160 at 3389.080 kb on + strand, within IAI46_16160 at 3389.080 kb on + strand, within IAI46_16160 at 3389.249 kb on - strand, within IAI46_16160 at 3389.435 kb on + strand at 3389.435 kb on + strand at 3390.385 kb on + strand, within IAI46_16165
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 60 uM, anaerobic remove 3,387,765 + +0.4 3,387,766 - -1.3 3,387,766 - +0.2 3,387,858 + +0.8 3,387,860 + -1.0 3,387,860 + +1.1 3,387,861 - -0.0 3,387,861 - -1.8 3,387,909 + -1.6 3,387,909 + -1.5 3,387,909 + -0.3 3,387,909 + +1.1 3,387,910 - +0.4 3,387,910 - +1.0 3,388,007 + -0.3 3,388,049 + -0.2 3,388,050 - +0.8 3,388,050 - +0.7 3,388,134 + +0.1 3,388,134 + -0.8 3,388,168 + IAI46_16155 0.14 +1.1 3,388,168 + IAI46_16155 0.14 +0.3 3,388,169 - IAI46_16155 0.15 -0.3 3,388,326 - IAI46_16155 0.37 +0.3 3,388,326 - IAI46_16155 0.37 +1.8 3,388,339 + IAI46_16155 0.39 +0.3 3,388,430 - IAI46_16155 0.53 +0.8 3,388,498 + IAI46_16155 0.62 +0.8 3,388,498 + IAI46_16155 0.62 -0.5 3,388,499 - IAI46_16155 0.63 -0.5 3,388,577 - IAI46_16155 0.74 -0.5 3,388,578 + IAI46_16155 0.74 +0.3 3,388,645 - IAI46_16155 0.84 -0.0 3,388,690 - -1.7 3,388,690 - +0.3 3,388,706 + +0.3 3,388,754 - +1.5 3,388,754 - +1.2 3,388,777 - +1.0 3,388,777 - +0.3 3,388,870 + IAI46_16160 0.15 -0.3 3,388,871 - IAI46_16160 0.16 +0.1 3,388,871 - IAI46_16160 0.16 -0.2 3,389,080 + IAI46_16160 0.46 +0.5 3,389,080 + IAI46_16160 0.46 -1.4 3,389,249 - IAI46_16160 0.71 +0.1 3,389,435 + -0.6 3,389,435 + +0.9 3,390,385 + IAI46_16165 0.80 -0.0
Or see this region's nucleotide sequence