Strain Fitness in Serratia liquefaciens MT49 around IAI46_16160

Experiment: Cobalt chloride 60 uM, anaerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_16150 and IAI46_16155 are separated by 241 nucleotidesIAI46_16155 and IAI46_16160 are separated by 9 nucleotidesIAI46_16160 and IAI46_16165 overlap by 23 nucleotides IAI46_16150: IAI46_16150 - helix-turn-helix domain-containing protein, at 3,386,994 to 3,387,827 _16150 IAI46_16155: IAI46_16155 - 3-oxoacid CoA-transferase subunit A, at 3,388,069 to 3,388,755 _16155 IAI46_16160: IAI46_16160 - CoA transferase subunit B, at 3,388,765 to 3,389,445 _16160 IAI46_16165: IAI46_16165 - 3-oxoadipyl-CoA thiolase, at 3,389,423 to 3,390,625 _16165 Position (kb) 3388 3389 3390Strain fitness (log2 ratio) -2 -1 0 1 2at 3387.765 kb on + strandat 3387.766 kb on - strandat 3387.766 kb on - strandat 3387.858 kb on + strandat 3387.860 kb on + strandat 3387.860 kb on + strandat 3387.861 kb on - strandat 3387.861 kb on - strandat 3387.909 kb on + strandat 3387.909 kb on + strandat 3387.909 kb on + strandat 3387.909 kb on + strandat 3387.910 kb on - strandat 3387.910 kb on - strandat 3388.007 kb on + strandat 3388.049 kb on + strandat 3388.050 kb on - strandat 3388.050 kb on - strandat 3388.134 kb on + strandat 3388.134 kb on + strandat 3388.168 kb on + strand, within IAI46_16155at 3388.168 kb on + strand, within IAI46_16155at 3388.169 kb on - strand, within IAI46_16155at 3388.326 kb on - strand, within IAI46_16155at 3388.326 kb on - strand, within IAI46_16155at 3388.339 kb on + strand, within IAI46_16155at 3388.430 kb on - strand, within IAI46_16155at 3388.498 kb on + strand, within IAI46_16155at 3388.498 kb on + strand, within IAI46_16155at 3388.499 kb on - strand, within IAI46_16155at 3388.577 kb on - strand, within IAI46_16155at 3388.578 kb on + strand, within IAI46_16155at 3388.645 kb on - strand, within IAI46_16155at 3388.690 kb on - strandat 3388.690 kb on - strandat 3388.706 kb on + strandat 3388.754 kb on - strandat 3388.754 kb on - strandat 3388.777 kb on - strandat 3388.777 kb on - strandat 3388.870 kb on + strand, within IAI46_16160at 3388.871 kb on - strand, within IAI46_16160at 3388.871 kb on - strand, within IAI46_16160at 3389.080 kb on + strand, within IAI46_16160at 3389.080 kb on + strand, within IAI46_16160at 3389.249 kb on - strand, within IAI46_16160at 3389.435 kb on + strandat 3389.435 kb on + strandat 3390.385 kb on + strand, within IAI46_16165

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 60 uM, anaerobic
remove
3,387,765 + +0.4
3,387,766 - -1.3
3,387,766 - +0.2
3,387,858 + +0.8
3,387,860 + -1.0
3,387,860 + +1.1
3,387,861 - -0.0
3,387,861 - -1.8
3,387,909 + -1.6
3,387,909 + -1.5
3,387,909 + -0.3
3,387,909 + +1.1
3,387,910 - +0.4
3,387,910 - +1.0
3,388,007 + -0.3
3,388,049 + -0.2
3,388,050 - +0.8
3,388,050 - +0.7
3,388,134 + +0.1
3,388,134 + -0.8
3,388,168 + IAI46_16155 0.14 +1.1
3,388,168 + IAI46_16155 0.14 +0.3
3,388,169 - IAI46_16155 0.15 -0.3
3,388,326 - IAI46_16155 0.37 +0.3
3,388,326 - IAI46_16155 0.37 +1.8
3,388,339 + IAI46_16155 0.39 +0.3
3,388,430 - IAI46_16155 0.53 +0.8
3,388,498 + IAI46_16155 0.62 +0.8
3,388,498 + IAI46_16155 0.62 -0.5
3,388,499 - IAI46_16155 0.63 -0.5
3,388,577 - IAI46_16155 0.74 -0.5
3,388,578 + IAI46_16155 0.74 +0.3
3,388,645 - IAI46_16155 0.84 -0.0
3,388,690 - -1.7
3,388,690 - +0.3
3,388,706 + +0.3
3,388,754 - +1.5
3,388,754 - +1.2
3,388,777 - +1.0
3,388,777 - +0.3
3,388,870 + IAI46_16160 0.15 -0.3
3,388,871 - IAI46_16160 0.16 +0.1
3,388,871 - IAI46_16160 0.16 -0.2
3,389,080 + IAI46_16160 0.46 +0.5
3,389,080 + IAI46_16160 0.46 -1.4
3,389,249 - IAI46_16160 0.71 +0.1
3,389,435 + -0.6
3,389,435 + +0.9
3,390,385 + IAI46_16165 0.80 -0.0

Or see this region's nucleotide sequence