Strain Fitness in Serratia liquefaciens MT49 around IAI46_16115

Experiment: Cobalt chloride 60 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_16105 and IAI46_16110 overlap by 17 nucleotidesIAI46_16110 and IAI46_16115 overlap by 4 nucleotidesIAI46_16115 and IAI46_16120 overlap by 4 nucleotides IAI46_16105: IAI46_16105 - 4-hydroxy-2-oxovalerate aldolase, at 3,376,759 to 3,377,760 _16105 IAI46_16110: IAI46_16110 - acetaldehyde dehydrogenase (acetylating), at 3,377,744 to 3,378,631 _16110 IAI46_16115: IAI46_16115 - CoA ester lyase, at 3,378,628 to 3,379,491 _16115 IAI46_16120: IAI46_16120 - aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme, at 3,379,488 to 3,380,711 _16120 Position (kb) 3378 3379 3380Strain fitness (log2 ratio) -2 -1 0 1 2at 3377.659 kb on - strand, within IAI46_16105at 3377.663 kb on - strandat 3377.762 kb on - strandat 3377.793 kb on + strandat 3377.847 kb on + strand, within IAI46_16110at 3377.847 kb on + strand, within IAI46_16110at 3378.130 kb on - strand, within IAI46_16110at 3378.130 kb on - strand, within IAI46_16110at 3378.311 kb on - strand, within IAI46_16110at 3378.345 kb on - strand, within IAI46_16110at 3378.345 kb on - strand, within IAI46_16110at 3378.574 kb on + strandat 3378.948 kb on + strand, within IAI46_16115at 3378.948 kb on + strand, within IAI46_16115at 3379.327 kb on - strand, within IAI46_16115at 3379.367 kb on - strand, within IAI46_16115at 3379.393 kb on + strand, within IAI46_16115at 3379.394 kb on - strand, within IAI46_16115at 3379.406 kb on + strandat 3379.432 kb on + strandat 3379.622 kb on - strand, within IAI46_16120at 3379.701 kb on - strand, within IAI46_16120at 3379.701 kb on - strand, within IAI46_16120at 3379.850 kb on - strand, within IAI46_16120at 3379.961 kb on + strand, within IAI46_16120at 3379.989 kb on - strand, within IAI46_16120at 3380.068 kb on + strand, within IAI46_16120at 3380.107 kb on + strand, within IAI46_16120at 3380.108 kb on - strand, within IAI46_16120at 3380.141 kb on - strand, within IAI46_16120at 3380.141 kb on - strand, within IAI46_16120at 3380.156 kb on - strand, within IAI46_16120at 3380.195 kb on - strand, within IAI46_16120at 3380.195 kb on - strand, within IAI46_16120at 3380.319 kb on - strand, within IAI46_16120

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 60 uM, anaerobic
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3,377,659 - IAI46_16105 0.90 +0.7
3,377,663 - +0.6
3,377,762 - +0.2
3,377,793 + +1.3
3,377,847 + IAI46_16110 0.12 -1.8
3,377,847 + IAI46_16110 0.12 -1.6
3,378,130 - IAI46_16110 0.43 -1.2
3,378,130 - IAI46_16110 0.43 +1.7
3,378,311 - IAI46_16110 0.64 +1.4
3,378,345 - IAI46_16110 0.68 -0.3
3,378,345 - IAI46_16110 0.68 -0.1
3,378,574 + +0.0
3,378,948 + IAI46_16115 0.37 -0.2
3,378,948 + IAI46_16115 0.37 -0.9
3,379,327 - IAI46_16115 0.81 +0.5
3,379,367 - IAI46_16115 0.86 -0.0
3,379,393 + IAI46_16115 0.89 -0.1
3,379,394 - IAI46_16115 0.89 +0.4
3,379,406 + +0.1
3,379,432 + +0.3
3,379,622 - IAI46_16120 0.11 -1.4
3,379,701 - IAI46_16120 0.17 -0.3
3,379,701 - IAI46_16120 0.17 -2.0
3,379,850 - IAI46_16120 0.30 +0.7
3,379,961 + IAI46_16120 0.39 +0.6
3,379,989 - IAI46_16120 0.41 +1.9
3,380,068 + IAI46_16120 0.47 -0.2
3,380,107 + IAI46_16120 0.51 -0.5
3,380,108 - IAI46_16120 0.51 +0.5
3,380,141 - IAI46_16120 0.53 +0.7
3,380,141 - IAI46_16120 0.53 +0.7
3,380,156 - IAI46_16120 0.55 -0.2
3,380,195 - IAI46_16120 0.58 +1.3
3,380,195 - IAI46_16120 0.58 +0.1
3,380,319 - IAI46_16120 0.68 +0.1

Or see this region's nucleotide sequence