Strain Fitness in Serratia liquefaciens MT49 around IAI46_15865

Experiment: Cobalt chloride 60 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_15855 and IAI46_15860 are separated by 22 nucleotidesIAI46_15860 and IAI46_15865 overlap by 4 nucleotidesIAI46_15865 and IAI46_15870 are separated by 430 nucleotidesIAI46_15870 and IAI46_15875 are separated by 5 nucleotides IAI46_15855: IAI46_15855 - flagellum-specific ATP synthase FliI, at 3,330,432 to 3,331,793 _15855 IAI46_15860: IAI46_15860 - flagella biosynthesis chaperone FliJ, at 3,331,816 to 3,332,262 _15860 IAI46_15865: IAI46_15865 - flagellar hook-length control protein FliK, at 3,332,259 to 3,333,473 _15865 IAI46_15870: IAI46_15870 - flagellar basal body-associated protein FliL, at 3,333,904 to 3,334,386 _15870 IAI46_15875: IAI46_15875 - flagellar motor switch protein FliM, at 3,334,392 to 3,335,393 _15875 Position (kb) 3332 3333 3334Strain fitness (log2 ratio) -2 -1 0 1 2at 3331.318 kb on - strand, within IAI46_15855at 3331.620 kb on + strand, within IAI46_15855at 3331.656 kb on + strand, within IAI46_15855at 3331.720 kb on - strandat 3331.868 kb on + strand, within IAI46_15860at 3331.869 kb on - strand, within IAI46_15860at 3331.869 kb on - strand, within IAI46_15860at 3332.020 kb on + strand, within IAI46_15860at 3332.020 kb on + strand, within IAI46_15860at 3332.021 kb on - strand, within IAI46_15860at 3332.021 kb on - strand, within IAI46_15860at 3332.252 kb on + strandat 3332.252 kb on + strandat 3332.252 kb on + strandat 3332.253 kb on - strandat 3332.253 kb on - strandat 3332.513 kb on - strand, within IAI46_15865at 3332.556 kb on - strand, within IAI46_15865at 3333.028 kb on + strand, within IAI46_15865at 3333.028 kb on + strand, within IAI46_15865at 3333.513 kb on + strandat 3333.565 kb on - strandat 3333.612 kb on + strandat 3333.612 kb on + strandat 3333.612 kb on + strandat 3333.612 kb on + strandat 3333.613 kb on - strandat 3333.613 kb on - strandat 3333.616 kb on + strandat 3333.616 kb on + strandat 3333.616 kb on + strandat 3333.617 kb on - strandat 3333.617 kb on - strandat 3333.617 kb on - strandat 3333.617 kb on - strandat 3333.620 kb on + strandat 3333.620 kb on + strandat 3333.621 kb on - strandat 3333.636 kb on + strandat 3333.637 kb on - strandat 3333.680 kb on + strandat 3333.702 kb on - strandat 3333.710 kb on + strandat 3333.710 kb on + strandat 3333.711 kb on - strandat 3333.712 kb on + strandat 3333.713 kb on - strandat 3333.713 kb on - strandat 3333.714 kb on + strandat 3333.756 kb on + strandat 3333.756 kb on + strandat 3333.758 kb on + strandat 3333.758 kb on + strandat 3333.759 kb on - strandat 3333.814 kb on + strandat 3333.822 kb on + strandat 3333.878 kb on + strandat 3333.880 kb on + strandat 3333.880 kb on + strandat 3333.899 kb on + strandat 3333.899 kb on + strandat 3333.899 kb on + strandat 3333.900 kb on - strandat 3333.900 kb on - strandat 3333.903 kb on + strandat 3333.903 kb on + strandat 3333.904 kb on - strandat 3333.920 kb on + strandat 3333.953 kb on + strand, within IAI46_15870at 3333.954 kb on - strand, within IAI46_15870at 3333.954 kb on - strand, within IAI46_15870at 3333.969 kb on - strand, within IAI46_15870at 3334.078 kb on - strand, within IAI46_15870at 3334.078 kb on - strand, within IAI46_15870at 3334.141 kb on + strand, within IAI46_15870at 3334.141 kb on + strand, within IAI46_15870at 3334.142 kb on - strand, within IAI46_15870at 3334.142 kb on - strand, within IAI46_15870at 3334.142 kb on - strand, within IAI46_15870at 3334.142 kb on - strand, within IAI46_15870at 3334.142 kb on - strand, within IAI46_15870at 3334.144 kb on - strand, within IAI46_15870at 3334.312 kb on - strand, within IAI46_15870at 3334.376 kb on + strandat 3334.377 kb on - strandat 3334.391 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 60 uM, anaerobic
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3,331,318 - IAI46_15855 0.65 +0.1
3,331,620 + IAI46_15855 0.87 +1.5
3,331,656 + IAI46_15855 0.90 -0.5
3,331,720 - -0.4
3,331,868 + IAI46_15860 0.12 -0.0
3,331,869 - IAI46_15860 0.12 -0.2
3,331,869 - IAI46_15860 0.12 -2.4
3,332,020 + IAI46_15860 0.46 -0.1
3,332,020 + IAI46_15860 0.46 -0.8
3,332,021 - IAI46_15860 0.46 +0.5
3,332,021 - IAI46_15860 0.46 +1.9
3,332,252 + +0.4
3,332,252 + -0.6
3,332,252 + -0.2
3,332,253 - +0.1
3,332,253 - +0.9
3,332,513 - IAI46_15865 0.21 -0.1
3,332,556 - IAI46_15865 0.24 +0.3
3,333,028 + IAI46_15865 0.63 -0.6
3,333,028 + IAI46_15865 0.63 -0.8
3,333,513 + +0.1
3,333,565 - -1.1
3,333,612 + -1.0
3,333,612 + +0.2
3,333,612 + +0.4
3,333,612 + -0.9
3,333,613 - -0.1
3,333,613 - +0.1
3,333,616 + -0.6
3,333,616 + +1.2
3,333,616 + +1.3
3,333,617 - +0.2
3,333,617 - -0.7
3,333,617 - +0.4
3,333,617 - +1.3
3,333,620 + -0.7
3,333,620 + -0.1
3,333,621 - -0.3
3,333,636 + +0.4
3,333,637 - +0.3
3,333,680 + -0.5
3,333,702 - +0.1
3,333,710 + +2.0
3,333,710 + +0.7
3,333,711 - +0.6
3,333,712 + -0.3
3,333,713 - -0.3
3,333,713 - +0.8
3,333,714 + -0.6
3,333,756 + +1.4
3,333,756 + +0.5
3,333,758 + -0.9
3,333,758 + -1.2
3,333,759 - -0.1
3,333,814 + -0.6
3,333,822 + +0.1
3,333,878 + -0.0
3,333,880 + +0.1
3,333,880 + +0.1
3,333,899 + +0.6
3,333,899 + +0.4
3,333,899 + +0.7
3,333,900 - -1.0
3,333,900 - +0.8
3,333,903 + +0.8
3,333,903 + +1.1
3,333,904 - +0.0
3,333,920 + -1.1
3,333,953 + IAI46_15870 0.10 -0.8
3,333,954 - IAI46_15870 0.10 -0.2
3,333,954 - IAI46_15870 0.10 +0.6
3,333,969 - IAI46_15870 0.13 +0.7
3,334,078 - IAI46_15870 0.36 -0.5
3,334,078 - IAI46_15870 0.36 -0.1
3,334,141 + IAI46_15870 0.49 -0.1
3,334,141 + IAI46_15870 0.49 +0.3
3,334,142 - IAI46_15870 0.49 +0.5
3,334,142 - IAI46_15870 0.49 +0.9
3,334,142 - IAI46_15870 0.49 -1.1
3,334,142 - IAI46_15870 0.49 +0.3
3,334,142 - IAI46_15870 0.49 +1.0
3,334,144 - IAI46_15870 0.50 -0.3
3,334,312 - IAI46_15870 0.84 +0.1
3,334,376 + -0.0
3,334,377 - +0.1
3,334,391 + +0.2

Or see this region's nucleotide sequence