Strain Fitness in Serratia liquefaciens MT49 around IAI46_15835

Experiment: Cobalt chloride 60 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_15825 and IAI46_15830 are separated by 53 nucleotidesIAI46_15830 and IAI46_15835 are separated by 212 nucleotidesIAI46_15835 and IAI46_15840 are separated by 481 nucleotides IAI46_15825: IAI46_15825 - uracil-xanthine permease, at 3,324,207 to 3,325,532 _15825 IAI46_15830: IAI46_15830 - Tn3 family transposase, at 3,325,586 to 3,326,037 _15830 IAI46_15835: IAI46_15835 - flagellar hook-basal body complex protein FliE, at 3,326,250 to 3,326,564 _15835 IAI46_15840: IAI46_15840 - flagellar M-ring protein FliF, at 3,327,046 to 3,328,746 _15840 Position (kb) 3326 3327Strain fitness (log2 ratio) -1 0 1at 3325.281 kb on - strand, within IAI46_15825at 3325.433 kb on - strandat 3325.458 kb on - strandat 3325.487 kb on - strandat 3325.523 kb on - strandat 3325.737 kb on + strand, within IAI46_15830at 3325.737 kb on + strand, within IAI46_15830at 3325.737 kb on + strand, within IAI46_15830at 3325.738 kb on - strand, within IAI46_15830at 3325.839 kb on + strand, within IAI46_15830at 3325.840 kb on - strand, within IAI46_15830at 3325.841 kb on + strand, within IAI46_15830at 3325.841 kb on + strand, within IAI46_15830at 3325.939 kb on + strand, within IAI46_15830at 3325.941 kb on + strand, within IAI46_15830at 3325.941 kb on + strand, within IAI46_15830at 3326.026 kb on - strandat 3326.089 kb on + strandat 3326.167 kb on + strandat 3326.179 kb on + strandat 3326.180 kb on - strandat 3326.261 kb on + strandat 3326.279 kb on - strandat 3326.294 kb on + strand, within IAI46_15835at 3326.297 kb on + strand, within IAI46_15835at 3326.298 kb on - strand, within IAI46_15835at 3326.565 kb on + strandat 3326.566 kb on - strandat 3326.614 kb on - strandat 3326.634 kb on - strandat 3326.634 kb on - strandat 3326.653 kb on - strandat 3326.665 kb on + strandat 3326.665 kb on + strandat 3326.718 kb on + strandat 3326.721 kb on + strandat 3326.721 kb on + strandat 3326.722 kb on - strandat 3326.748 kb on + strandat 3326.750 kb on + strandat 3326.808 kb on + strandat 3326.809 kb on - strandat 3326.821 kb on + strandat 3326.821 kb on + strandat 3326.821 kb on + strandat 3326.913 kb on + strandat 3326.914 kb on - strandat 3326.918 kb on + strandat 3326.919 kb on - strandat 3326.920 kb on + strandat 3326.921 kb on - strandat 3326.924 kb on + strandat 3326.924 kb on + strandat 3326.924 kb on + strandat 3326.925 kb on - strandat 3326.925 kb on - strandat 3326.925 kb on - strandat 3326.925 kb on - strandat 3326.925 kb on - strandat 3326.925 kb on - strandat 3326.926 kb on + strandat 3326.926 kb on + strandat 3326.926 kb on + strandat 3326.926 kb on + strandat 3326.926 kb on + strandat 3326.927 kb on - strandat 3326.927 kb on - strandat 3326.927 kb on - strandat 3326.927 kb on - strandat 3326.927 kb on - strandat 3326.927 kb on - strandat 3326.932 kb on + strandat 3326.933 kb on - strandat 3326.933 kb on - strandat 3326.962 kb on + strandat 3326.995 kb on - strandat 3327.214 kb on + strandat 3327.214 kb on + strandat 3327.215 kb on - strandat 3327.500 kb on + strand, within IAI46_15840

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 60 uM, anaerobic
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3,325,281 - IAI46_15825 0.81 +0.6
3,325,433 - -0.1
3,325,458 - +0.8
3,325,487 - +0.3
3,325,523 - -0.1
3,325,737 + IAI46_15830 0.33 +0.3
3,325,737 + IAI46_15830 0.33 +1.1
3,325,737 + IAI46_15830 0.33 +0.8
3,325,738 - IAI46_15830 0.34 +0.5
3,325,839 + IAI46_15830 0.56 -0.1
3,325,840 - IAI46_15830 0.56 +0.1
3,325,841 + IAI46_15830 0.56 -0.1
3,325,841 + IAI46_15830 0.56 +0.1
3,325,939 + IAI46_15830 0.78 +0.8
3,325,941 + IAI46_15830 0.79 -0.1
3,325,941 + IAI46_15830 0.79 +0.1
3,326,026 - -1.3
3,326,089 + +0.9
3,326,167 + -0.4
3,326,179 + +0.1
3,326,180 - +1.2
3,326,261 + -0.9
3,326,279 - +0.5
3,326,294 + IAI46_15835 0.14 +0.3
3,326,297 + IAI46_15835 0.15 -0.6
3,326,298 - IAI46_15835 0.15 +0.5
3,326,565 + -0.5
3,326,566 - -0.5
3,326,614 - +0.2
3,326,634 - +0.5
3,326,634 - +1.3
3,326,653 - -0.1
3,326,665 + -1.1
3,326,665 + +0.1
3,326,718 + -1.1
3,326,721 + -0.2
3,326,721 + +0.4
3,326,722 - +0.4
3,326,748 + -1.2
3,326,750 + -1.1
3,326,808 + -1.0
3,326,809 - -0.2
3,326,821 + +0.9
3,326,821 + -0.6
3,326,821 + -0.5
3,326,913 + +0.1
3,326,914 - +1.2
3,326,918 + +0.7
3,326,919 - -0.2
3,326,920 + -0.1
3,326,921 - -0.1
3,326,924 + -0.4
3,326,924 + +0.6
3,326,924 + +0.5
3,326,925 - +0.5
3,326,925 - +1.5
3,326,925 - +0.1
3,326,925 - -1.2
3,326,925 - +0.3
3,326,925 - -0.2
3,326,926 + +1.1
3,326,926 + +0.8
3,326,926 + -0.3
3,326,926 + -0.3
3,326,926 + +1.2
3,326,927 - +1.2
3,326,927 - -0.5
3,326,927 - -1.4
3,326,927 - +0.1
3,326,927 - -0.6
3,326,927 - +0.1
3,326,932 + -0.1
3,326,933 - +1.0
3,326,933 - -0.2
3,326,962 + -1.1
3,326,995 - +0.6
3,327,214 + +0.5
3,327,214 + +0.1
3,327,215 - +0.2
3,327,500 + IAI46_15840 0.27 +0.3

Or see this region's nucleotide sequence