Experiment: Cobalt chloride 60 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_14765 and IAI46_14770 are separated by 241 nucleotides IAI46_14770 and IAI46_14775 are separated by 33 nucleotides IAI46_14775 and IAI46_14780 are separated by 63 nucleotides
IAI46_14765: IAI46_14765 - ATP-dependent RNA helicase DbpA, at 3,125,688 to 3,127,070
_14765
IAI46_14770: IAI46_14770 - formate-dependent phosphoribosylglycinamide formyltransferase, at 3,127,312 to 3,128,490
_14770
IAI46_14775: IAI46_14775 - YoaH family protein, at 3,128,524 to 3,128,769
_14775
IAI46_14780: IAI46_14780 - glycosyltransferase, at 3,128,833 to 3,129,840
_14780
Position (kb)
3127
3128
3129 Strain fitness (log2 ratio)
-1
0
1
2 at 3126.912 kb on - strand, within IAI46_14765 at 3126.939 kb on + strand at 3126.940 kb on - strand at 3127.076 kb on + strand at 3127.083 kb on + strand at 3127.084 kb on - strand at 3127.085 kb on + strand at 3127.085 kb on + strand at 3127.256 kb on - strand at 3127.258 kb on - strand at 3127.285 kb on - strand at 3127.285 kb on - strand at 3127.285 kb on - strand at 3127.303 kb on + strand at 3127.311 kb on + strand at 3127.312 kb on - strand at 3127.316 kb on + strand at 3127.317 kb on - strand at 3127.317 kb on - strand at 3127.321 kb on - strand at 3127.486 kb on - strand, within IAI46_14770 at 3127.488 kb on + strand, within IAI46_14770 at 3127.488 kb on + strand, within IAI46_14770 at 3127.489 kb on - strand, within IAI46_14770 at 3127.544 kb on - strand, within IAI46_14770 at 3127.849 kb on + strand, within IAI46_14770 at 3127.955 kb on + strand, within IAI46_14770 at 3127.955 kb on + strand, within IAI46_14770 at 3128.529 kb on - strand at 3128.529 kb on - strand at 3128.529 kb on - strand at 3128.583 kb on - strand, within IAI46_14775 at 3128.613 kb on + strand, within IAI46_14775 at 3128.713 kb on - strand, within IAI46_14775 at 3128.738 kb on - strand, within IAI46_14775 at 3128.738 kb on - strand, within IAI46_14775 at 3128.800 kb on + strand at 3128.801 kb on - strand at 3128.801 kb on - strand at 3128.801 kb on - strand at 3128.802 kb on + strand at 3128.920 kb on - strand at 3128.967 kb on - strand, within IAI46_14780 at 3129.135 kb on - strand, within IAI46_14780 at 3129.213 kb on - strand, within IAI46_14780 at 3129.231 kb on - strand, within IAI46_14780 at 3129.477 kb on - strand, within IAI46_14780
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 60 uM, anaerobic remove 3,126,912 - IAI46_14765 0.89 -0.3 3,126,939 + +1.3 3,126,940 - -1.5 3,127,076 + -1.2 3,127,083 + -1.2 3,127,084 - -0.2 3,127,085 + -1.1 3,127,085 + +0.1 3,127,256 - -1.0 3,127,258 - -0.9 3,127,285 - +0.2 3,127,285 - +0.6 3,127,285 - -0.7 3,127,303 + -0.0 3,127,311 + +0.6 3,127,312 - -0.3 3,127,316 + -1.3 3,127,317 - -1.2 3,127,317 - -0.2 3,127,321 - +0.4 3,127,486 - IAI46_14770 0.15 +0.1 3,127,488 + IAI46_14770 0.15 +0.8 3,127,488 + IAI46_14770 0.15 +0.7 3,127,489 - IAI46_14770 0.15 +2.0 3,127,544 - IAI46_14770 0.20 -0.4 3,127,849 + IAI46_14770 0.46 +0.1 3,127,955 + IAI46_14770 0.55 -0.6 3,127,955 + IAI46_14770 0.55 -0.8 3,128,529 - -1.4 3,128,529 - +0.0 3,128,529 - -0.2 3,128,583 - IAI46_14775 0.24 -0.9 3,128,613 + IAI46_14775 0.36 -0.1 3,128,713 - IAI46_14775 0.77 +1.1 3,128,738 - IAI46_14775 0.87 +0.1 3,128,738 - IAI46_14775 0.87 +0.1 3,128,800 + -0.8 3,128,801 - +0.8 3,128,801 - +1.2 3,128,801 - -0.5 3,128,802 + -1.2 3,128,920 - +2.2 3,128,967 - IAI46_14780 0.13 -0.5 3,129,135 - IAI46_14780 0.30 +0.8 3,129,213 - IAI46_14780 0.38 +1.3 3,129,231 - IAI46_14780 0.39 +0.1 3,129,477 - IAI46_14780 0.64 -0.4
Or see this region's nucleotide sequence