Strain Fitness in Serratia liquefaciens MT49 around IAI46_14770

Experiment: Cobalt chloride 60 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_14765 and IAI46_14770 are separated by 241 nucleotidesIAI46_14770 and IAI46_14775 are separated by 33 nucleotidesIAI46_14775 and IAI46_14780 are separated by 63 nucleotides IAI46_14765: IAI46_14765 - ATP-dependent RNA helicase DbpA, at 3,125,688 to 3,127,070 _14765 IAI46_14770: IAI46_14770 - formate-dependent phosphoribosylglycinamide formyltransferase, at 3,127,312 to 3,128,490 _14770 IAI46_14775: IAI46_14775 - YoaH family protein, at 3,128,524 to 3,128,769 _14775 IAI46_14780: IAI46_14780 - glycosyltransferase, at 3,128,833 to 3,129,840 _14780 Position (kb) 3127 3128 3129Strain fitness (log2 ratio) -1 0 1 2at 3126.912 kb on - strand, within IAI46_14765at 3126.939 kb on + strandat 3126.940 kb on - strandat 3127.076 kb on + strandat 3127.083 kb on + strandat 3127.084 kb on - strandat 3127.085 kb on + strandat 3127.085 kb on + strandat 3127.256 kb on - strandat 3127.258 kb on - strandat 3127.285 kb on - strandat 3127.285 kb on - strandat 3127.285 kb on - strandat 3127.303 kb on + strandat 3127.311 kb on + strandat 3127.312 kb on - strandat 3127.316 kb on + strandat 3127.317 kb on - strandat 3127.317 kb on - strandat 3127.321 kb on - strandat 3127.486 kb on - strand, within IAI46_14770at 3127.488 kb on + strand, within IAI46_14770at 3127.488 kb on + strand, within IAI46_14770at 3127.489 kb on - strand, within IAI46_14770at 3127.544 kb on - strand, within IAI46_14770at 3127.849 kb on + strand, within IAI46_14770at 3127.955 kb on + strand, within IAI46_14770at 3127.955 kb on + strand, within IAI46_14770at 3128.529 kb on - strandat 3128.529 kb on - strandat 3128.529 kb on - strandat 3128.583 kb on - strand, within IAI46_14775at 3128.613 kb on + strand, within IAI46_14775at 3128.713 kb on - strand, within IAI46_14775at 3128.738 kb on - strand, within IAI46_14775at 3128.738 kb on - strand, within IAI46_14775at 3128.800 kb on + strandat 3128.801 kb on - strandat 3128.801 kb on - strandat 3128.801 kb on - strandat 3128.802 kb on + strandat 3128.920 kb on - strandat 3128.967 kb on - strand, within IAI46_14780at 3129.135 kb on - strand, within IAI46_14780at 3129.213 kb on - strand, within IAI46_14780at 3129.231 kb on - strand, within IAI46_14780at 3129.477 kb on - strand, within IAI46_14780

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 60 uM, anaerobic
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3,126,912 - IAI46_14765 0.89 -0.3
3,126,939 + +1.3
3,126,940 - -1.5
3,127,076 + -1.2
3,127,083 + -1.2
3,127,084 - -0.2
3,127,085 + -1.1
3,127,085 + +0.1
3,127,256 - -1.0
3,127,258 - -0.9
3,127,285 - +0.2
3,127,285 - +0.6
3,127,285 - -0.7
3,127,303 + -0.0
3,127,311 + +0.6
3,127,312 - -0.3
3,127,316 + -1.3
3,127,317 - -1.2
3,127,317 - -0.2
3,127,321 - +0.4
3,127,486 - IAI46_14770 0.15 +0.1
3,127,488 + IAI46_14770 0.15 +0.8
3,127,488 + IAI46_14770 0.15 +0.7
3,127,489 - IAI46_14770 0.15 +2.0
3,127,544 - IAI46_14770 0.20 -0.4
3,127,849 + IAI46_14770 0.46 +0.1
3,127,955 + IAI46_14770 0.55 -0.6
3,127,955 + IAI46_14770 0.55 -0.8
3,128,529 - -1.4
3,128,529 - +0.0
3,128,529 - -0.2
3,128,583 - IAI46_14775 0.24 -0.9
3,128,613 + IAI46_14775 0.36 -0.1
3,128,713 - IAI46_14775 0.77 +1.1
3,128,738 - IAI46_14775 0.87 +0.1
3,128,738 - IAI46_14775 0.87 +0.1
3,128,800 + -0.8
3,128,801 - +0.8
3,128,801 - +1.2
3,128,801 - -0.5
3,128,802 + -1.2
3,128,920 - +2.2
3,128,967 - IAI46_14780 0.13 -0.5
3,129,135 - IAI46_14780 0.30 +0.8
3,129,213 - IAI46_14780 0.38 +1.3
3,129,231 - IAI46_14780 0.39 +0.1
3,129,477 - IAI46_14780 0.64 -0.4

Or see this region's nucleotide sequence