Strain Fitness in Serratia liquefaciens MT49 around IAI46_14765

Experiment: Cobalt chloride 60 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_14750 and IAI46_14755 are separated by 70 nucleotidesIAI46_14755 and IAI46_14760 are separated by 39 nucleotidesIAI46_14760 and IAI46_14765 are separated by 88 nucleotidesIAI46_14765 and IAI46_14770 are separated by 241 nucleotides IAI46_14750: IAI46_14750 - hypothetical protein, at 3,124,498 to 3,124,857 _14750 IAI46_14755: IAI46_14755 - ASCH domain-containing protein, at 3,124,928 to 3,125,236 _14755 IAI46_14760: IAI46_14760 - YebG family protein, at 3,125,276 to 3,125,599 _14760 IAI46_14765: IAI46_14765 - ATP-dependent RNA helicase DbpA, at 3,125,688 to 3,127,070 _14765 IAI46_14770: IAI46_14770 - formate-dependent phosphoribosylglycinamide formyltransferase, at 3,127,312 to 3,128,490 _14770 Position (kb) 3125 3126 3127 3128Strain fitness (log2 ratio) -2 -1 0 1 2at 3124.706 kb on + strand, within IAI46_14750at 3124.804 kb on - strand, within IAI46_14750at 3125.043 kb on - strand, within IAI46_14755at 3125.124 kb on - strand, within IAI46_14755at 3125.170 kb on + strand, within IAI46_14755at 3125.171 kb on - strand, within IAI46_14755at 3125.171 kb on - strand, within IAI46_14755at 3125.269 kb on + strandat 3125.277 kb on + strandat 3125.278 kb on - strandat 3125.278 kb on - strandat 3125.581 kb on - strandat 3125.656 kb on - strandat 3125.656 kb on - strandat 3125.786 kb on - strandat 3125.993 kb on - strand, within IAI46_14765at 3126.122 kb on - strand, within IAI46_14765at 3126.122 kb on - strand, within IAI46_14765at 3126.269 kb on + strand, within IAI46_14765at 3126.270 kb on - strand, within IAI46_14765at 3126.912 kb on - strand, within IAI46_14765at 3126.939 kb on + strandat 3126.940 kb on - strandat 3127.076 kb on + strandat 3127.083 kb on + strandat 3127.084 kb on - strandat 3127.085 kb on + strandat 3127.085 kb on + strandat 3127.256 kb on - strandat 3127.258 kb on - strandat 3127.285 kb on - strandat 3127.285 kb on - strandat 3127.285 kb on - strandat 3127.303 kb on + strandat 3127.311 kb on + strandat 3127.312 kb on - strandat 3127.316 kb on + strandat 3127.317 kb on - strandat 3127.317 kb on - strandat 3127.321 kb on - strandat 3127.486 kb on - strand, within IAI46_14770at 3127.488 kb on + strand, within IAI46_14770at 3127.488 kb on + strand, within IAI46_14770at 3127.489 kb on - strand, within IAI46_14770at 3127.544 kb on - strand, within IAI46_14770at 3127.849 kb on + strand, within IAI46_14770at 3127.955 kb on + strand, within IAI46_14770at 3127.955 kb on + strand, within IAI46_14770

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 60 uM, anaerobic
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3,124,706 + IAI46_14750 0.58 +0.6
3,124,804 - IAI46_14750 0.85 -1.9
3,125,043 - IAI46_14755 0.37 +0.7
3,125,124 - IAI46_14755 0.63 +0.4
3,125,170 + IAI46_14755 0.78 -0.1
3,125,171 - IAI46_14755 0.79 +0.0
3,125,171 - IAI46_14755 0.79 +0.0
3,125,269 + +0.1
3,125,277 + +0.7
3,125,278 - +0.3
3,125,278 - +0.4
3,125,581 - +0.3
3,125,656 - +0.4
3,125,656 - -0.6
3,125,786 - -0.2
3,125,993 - IAI46_14765 0.22 +0.6
3,126,122 - IAI46_14765 0.31 +0.3
3,126,122 - IAI46_14765 0.31 -0.4
3,126,269 + IAI46_14765 0.42 +1.0
3,126,270 - IAI46_14765 0.42 +0.6
3,126,912 - IAI46_14765 0.89 -0.3
3,126,939 + +1.3
3,126,940 - -1.5
3,127,076 + -1.2
3,127,083 + -1.2
3,127,084 - -0.2
3,127,085 + -1.1
3,127,085 + +0.1
3,127,256 - -1.0
3,127,258 - -0.9
3,127,285 - +0.2
3,127,285 - +0.6
3,127,285 - -0.7
3,127,303 + -0.0
3,127,311 + +0.6
3,127,312 - -0.3
3,127,316 + -1.3
3,127,317 - -1.2
3,127,317 - -0.2
3,127,321 - +0.4
3,127,486 - IAI46_14770 0.15 +0.1
3,127,488 + IAI46_14770 0.15 +0.8
3,127,488 + IAI46_14770 0.15 +0.7
3,127,489 - IAI46_14770 0.15 +2.0
3,127,544 - IAI46_14770 0.20 -0.4
3,127,849 + IAI46_14770 0.46 +0.1
3,127,955 + IAI46_14770 0.55 -0.6
3,127,955 + IAI46_14770 0.55 -0.8

Or see this region's nucleotide sequence