Strain Fitness in Serratia liquefaciens MT49 around IAI46_12845

Experiment: Cobalt chloride 60 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_12840 and IAI46_12845 are separated by 1 nucleotidesIAI46_12845 and IAI46_12850 are separated by 9 nucleotides IAI46_12840: IAI46_12840 - hydroxyacid dehydrogenase, at 2,735,568 to 2,736,548 _12840 IAI46_12845: IAI46_12845 - 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase, at 2,736,550 to 2,737,365 _12845 IAI46_12850: IAI46_12850 - NAD-dependent succinate-semialdehyde dehydrogenase, at 2,737,375 to 2,738,808 _12850 Position (kb) 2736 2737 2738Strain fitness (log2 ratio) -2 -1 0 1 2at 2735.740 kb on - strand, within IAI46_12840at 2736.031 kb on + strand, within IAI46_12840at 2736.032 kb on - strand, within IAI46_12840at 2736.096 kb on - strand, within IAI46_12840at 2736.236 kb on + strand, within IAI46_12840at 2736.236 kb on + strand, within IAI46_12840at 2736.430 kb on + strand, within IAI46_12840at 2736.431 kb on - strand, within IAI46_12840at 2736.496 kb on - strandat 2736.538 kb on - strandat 2736.650 kb on - strand, within IAI46_12845at 2736.772 kb on + strand, within IAI46_12845at 2736.972 kb on - strand, within IAI46_12845at 2737.169 kb on - strand, within IAI46_12845at 2737.197 kb on + strand, within IAI46_12845at 2737.198 kb on - strand, within IAI46_12845at 2737.240 kb on + strand, within IAI46_12845at 2737.376 kb on + strandat 2737.410 kb on - strandat 2737.420 kb on - strandat 2737.497 kb on - strandat 2737.497 kb on - strandat 2737.574 kb on + strand, within IAI46_12850at 2737.728 kb on - strand, within IAI46_12850at 2738.042 kb on - strand, within IAI46_12850at 2738.177 kb on + strand, within IAI46_12850at 2738.178 kb on - strand, within IAI46_12850at 2738.272 kb on + strand, within IAI46_12850at 2738.272 kb on + strand, within IAI46_12850at 2738.273 kb on - strand, within IAI46_12850at 2738.301 kb on + strand, within IAI46_12850

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 60 uM, anaerobic
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2,735,740 - IAI46_12840 0.18 -0.1
2,736,031 + IAI46_12840 0.47 +1.2
2,736,032 - IAI46_12840 0.47 -0.9
2,736,096 - IAI46_12840 0.54 +0.7
2,736,236 + IAI46_12840 0.68 -0.7
2,736,236 + IAI46_12840 0.68 +1.2
2,736,430 + IAI46_12840 0.88 -0.1
2,736,431 - IAI46_12840 0.88 +0.0
2,736,496 - +0.6
2,736,538 - +1.3
2,736,650 - IAI46_12845 0.12 +0.7
2,736,772 + IAI46_12845 0.27 -1.8
2,736,972 - IAI46_12845 0.52 +0.3
2,737,169 - IAI46_12845 0.76 +0.4
2,737,197 + IAI46_12845 0.79 +0.0
2,737,198 - IAI46_12845 0.79 +2.0
2,737,240 + IAI46_12845 0.85 +0.1
2,737,376 + -0.4
2,737,410 - -0.2
2,737,420 - -0.1
2,737,497 - -0.3
2,737,497 - +0.5
2,737,574 + IAI46_12850 0.14 +1.2
2,737,728 - IAI46_12850 0.25 +0.3
2,738,042 - IAI46_12850 0.47 +1.1
2,738,177 + IAI46_12850 0.56 -0.9
2,738,178 - IAI46_12850 0.56 -0.9
2,738,272 + IAI46_12850 0.63 +0.5
2,738,272 + IAI46_12850 0.63 -0.2
2,738,273 - IAI46_12850 0.63 -0.5
2,738,301 + IAI46_12850 0.65 +0.4

Or see this region's nucleotide sequence