Strain Fitness in Serratia liquefaciens MT49 around IAI46_12815

Experiment: Cobalt chloride 60 uM, anaerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_12810 and IAI46_12815 overlap by 4 nucleotidesIAI46_12815 and IAI46_12820 overlap by 11 nucleotides IAI46_12810: IAI46_12810 - LysR family transcriptional regulator, at 2,729,481 to 2,730,416 _12810 IAI46_12815: IAI46_12815 - 4-carboxymuconolactone decarboxylase, at 2,730,413 to 2,730,802 _12815 IAI46_12820: IAI46_12820 - 3-carboxy-cis,cis-muconate cycloisomerase, at 2,730,792 to 2,732,159 _12820 Position (kb) 2730 2731Strain fitness (log2 ratio) -2 -1 0 1at 2729.429 kb on + strandat 2729.501 kb on + strandat 2729.938 kb on + strand, within IAI46_12810at 2729.938 kb on + strand, within IAI46_12810at 2729.938 kb on + strand, within IAI46_12810at 2730.168 kb on + strand, within IAI46_12810at 2730.169 kb on - strand, within IAI46_12810at 2730.170 kb on + strand, within IAI46_12810at 2730.536 kb on + strand, within IAI46_12815at 2730.672 kb on + strand, within IAI46_12815at 2730.806 kb on + strandat 2731.032 kb on - strand, within IAI46_12820at 2731.237 kb on - strand, within IAI46_12820at 2731.237 kb on - strand, within IAI46_12820at 2731.317 kb on - strand, within IAI46_12820at 2731.334 kb on + strand, within IAI46_12820at 2731.597 kb on - strand, within IAI46_12820at 2731.674 kb on + strand, within IAI46_12820at 2731.675 kb on - strand, within IAI46_12820at 2731.794 kb on + strand, within IAI46_12820

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 60 uM, anaerobic
remove
2,729,429 + +1.3
2,729,501 + -0.8
2,729,938 + IAI46_12810 0.49 +0.9
2,729,938 + IAI46_12810 0.49 -2.1
2,729,938 + IAI46_12810 0.49 -0.2
2,730,168 + IAI46_12810 0.73 +0.0
2,730,169 - IAI46_12810 0.74 +0.5
2,730,170 + IAI46_12810 0.74 -0.7
2,730,536 + IAI46_12815 0.32 -0.1
2,730,672 + IAI46_12815 0.66 +1.7
2,730,806 + -1.7
2,731,032 - IAI46_12820 0.18 +0.3
2,731,237 - IAI46_12820 0.33 +0.5
2,731,237 - IAI46_12820 0.33 -1.1
2,731,317 - IAI46_12820 0.38 -0.4
2,731,334 + IAI46_12820 0.40 +0.8
2,731,597 - IAI46_12820 0.59 +0.1
2,731,674 + IAI46_12820 0.64 -0.2
2,731,675 - IAI46_12820 0.65 -0.0
2,731,794 + IAI46_12820 0.73 +0.1

Or see this region's nucleotide sequence