Experiment: Cobalt chloride 60 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_12795 and IAI46_12800 are separated by 211 nucleotides IAI46_12800 and IAI46_12805 overlap by 1 nucleotides IAI46_12805 and IAI46_12810 are separated by 95 nucleotides
IAI46_12795: IAI46_12795 - 6-phospho-beta-glucosidase, at 2,726,386 to 2,727,822
_12795
IAI46_12800: IAI46_12800 - protocatechuate 3,4-dioxygenase subunit beta, at 2,728,034 to 2,728,762
_12800
IAI46_12805: IAI46_12805 - protocatechuate 3,4-dioxygenase subunit alpha, at 2,728,762 to 2,729,385
_12805
IAI46_12810: IAI46_12810 - LysR family transcriptional regulator, at 2,729,481 to 2,730,416
_12810
Position (kb)
2728
2729
2730 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2727.821 kb on - strand at 2727.881 kb on + strand at 2727.891 kb on - strand at 2728.015 kb on - strand at 2728.063 kb on + strand at 2728.067 kb on + strand at 2728.278 kb on - strand, within IAI46_12800 at 2728.374 kb on - strand, within IAI46_12800 at 2728.440 kb on - strand, within IAI46_12800 at 2728.551 kb on + strand, within IAI46_12800 at 2728.551 kb on + strand, within IAI46_12800 at 2728.770 kb on - strand at 2728.775 kb on - strand at 2728.775 kb on - strand at 2728.810 kb on + strand at 2728.810 kb on + strand at 2728.810 kb on + strand at 2728.811 kb on - strand at 2729.093 kb on - strand, within IAI46_12805 at 2729.198 kb on + strand, within IAI46_12805 at 2729.429 kb on + strand at 2729.501 kb on + strand at 2729.938 kb on + strand, within IAI46_12810 at 2729.938 kb on + strand, within IAI46_12810 at 2729.938 kb on + strand, within IAI46_12810 at 2730.168 kb on + strand, within IAI46_12810 at 2730.169 kb on - strand, within IAI46_12810 at 2730.170 kb on + strand, within IAI46_12810
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 60 uM, anaerobic remove 2,727,821 - -0.0 2,727,881 + -0.8 2,727,891 - +1.2 2,728,015 - -0.5 2,728,063 + +0.8 2,728,067 + +1.9 2,728,278 - IAI46_12800 0.33 -1.5 2,728,374 - IAI46_12800 0.47 +0.3 2,728,440 - IAI46_12800 0.56 +1.3 2,728,551 + IAI46_12800 0.71 +0.5 2,728,551 + IAI46_12800 0.71 -0.1 2,728,770 - -0.0 2,728,775 - +0.2 2,728,775 - -0.2 2,728,810 + +0.1 2,728,810 + -0.5 2,728,810 + -3.3 2,728,811 - -0.1 2,729,093 - IAI46_12805 0.53 -1.0 2,729,198 + IAI46_12805 0.70 -0.4 2,729,429 + +1.3 2,729,501 + -0.8 2,729,938 + IAI46_12810 0.49 +0.9 2,729,938 + IAI46_12810 0.49 -2.1 2,729,938 + IAI46_12810 0.49 -0.2 2,730,168 + IAI46_12810 0.73 +0.0 2,730,169 - IAI46_12810 0.74 +0.5 2,730,170 + IAI46_12810 0.74 -0.7
Or see this region's nucleotide sequence