Experiment: Cobalt chloride 60 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_12740 and IAI46_12745 are separated by 152 nucleotides IAI46_12745 and IAI46_12750 are separated by 50 nucleotides
IAI46_12740: IAI46_12740 - LysR family transcriptional regulator, at 2,711,621 to 2,712,484
_12740
IAI46_12745: IAI46_12745 - gamma-glutamyltransferase, at 2,712,637 to 2,714,310
_12745
IAI46_12750: IAI46_12750 - DUF3857 domain-containing protein, at 2,714,361 to 2,716,304
_12750
Position (kb)
2712
2713
2714
2715 Strain fitness (log2 ratio)
-1
0
1
2 at 2711.960 kb on - strand, within IAI46_12740 at 2712.085 kb on + strand, within IAI46_12740 at 2712.085 kb on + strand, within IAI46_12740 at 2712.460 kb on - strand at 2712.460 kb on - strand at 2712.490 kb on + strand at 2712.491 kb on - strand at 2712.539 kb on + strand at 2712.539 kb on + strand at 2712.540 kb on - strand at 2712.581 kb on - strand at 2712.636 kb on + strand at 2712.637 kb on - strand at 2712.748 kb on + strand at 2712.749 kb on - strand at 2712.952 kb on + strand, within IAI46_12745 at 2712.952 kb on + strand, within IAI46_12745 at 2712.953 kb on - strand, within IAI46_12745 at 2713.028 kb on + strand, within IAI46_12745 at 2713.288 kb on + strand, within IAI46_12745 at 2713.289 kb on - strand, within IAI46_12745 at 2713.370 kb on - strand, within IAI46_12745 at 2713.424 kb on - strand, within IAI46_12745 at 2713.425 kb on + strand, within IAI46_12745 at 2713.531 kb on + strand, within IAI46_12745 at 2713.542 kb on - strand, within IAI46_12745 at 2713.774 kb on - strand, within IAI46_12745 at 2713.777 kb on + strand, within IAI46_12745 at 2714.050 kb on + strand, within IAI46_12745 at 2714.057 kb on - strand, within IAI46_12745 at 2714.057 kb on - strand, within IAI46_12745 at 2714.131 kb on + strand, within IAI46_12745 at 2714.189 kb on - strand at 2714.213 kb on - strand at 2714.225 kb on + strand at 2714.226 kb on - strand at 2714.226 kb on - strand at 2714.384 kb on + strand at 2714.415 kb on + strand at 2714.416 kb on - strand at 2714.662 kb on + strand, within IAI46_12750 at 2714.663 kb on - strand, within IAI46_12750 at 2714.697 kb on - strand, within IAI46_12750 at 2714.791 kb on + strand, within IAI46_12750 at 2714.792 kb on - strand, within IAI46_12750 at 2714.812 kb on + strand, within IAI46_12750 at 2714.812 kb on + strand, within IAI46_12750 at 2715.005 kb on + strand, within IAI46_12750 at 2715.197 kb on - strand, within IAI46_12750 at 2715.197 kb on - strand, within IAI46_12750
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 60 uM, anaerobic remove 2,711,960 - IAI46_12740 0.39 +0.0 2,712,085 + IAI46_12740 0.54 +1.1 2,712,085 + IAI46_12740 0.54 +0.6 2,712,460 - -0.2 2,712,460 - -0.5 2,712,490 + +0.3 2,712,491 - +0.6 2,712,539 + +1.6 2,712,539 + +1.1 2,712,540 - -0.0 2,712,581 - -0.9 2,712,636 + +1.2 2,712,637 - +0.7 2,712,748 + +0.9 2,712,749 - +0.5 2,712,952 + IAI46_12745 0.19 +0.5 2,712,952 + IAI46_12745 0.19 +0.7 2,712,953 - IAI46_12745 0.19 -0.0 2,713,028 + IAI46_12745 0.23 +0.3 2,713,288 + IAI46_12745 0.39 -1.2 2,713,289 - IAI46_12745 0.39 +0.3 2,713,370 - IAI46_12745 0.44 -0.1 2,713,424 - IAI46_12745 0.47 -0.0 2,713,425 + IAI46_12745 0.47 +0.2 2,713,531 + IAI46_12745 0.53 +2.0 2,713,542 - IAI46_12745 0.54 -0.5 2,713,774 - IAI46_12745 0.68 -0.4 2,713,777 + IAI46_12745 0.68 +0.7 2,714,050 + IAI46_12745 0.84 +0.1 2,714,057 - IAI46_12745 0.85 +0.8 2,714,057 - IAI46_12745 0.85 -0.2 2,714,131 + IAI46_12745 0.89 -0.7 2,714,189 - -0.7 2,714,213 - +0.5 2,714,225 + +0.3 2,714,226 - +0.6 2,714,226 - +0.5 2,714,384 + +0.5 2,714,415 + -0.1 2,714,416 - +1.5 2,714,662 + IAI46_12750 0.15 +0.3 2,714,663 - IAI46_12750 0.16 +0.2 2,714,697 - IAI46_12750 0.17 +0.5 2,714,791 + IAI46_12750 0.22 -1.7 2,714,792 - IAI46_12750 0.22 -0.4 2,714,812 + IAI46_12750 0.23 -0.3 2,714,812 + IAI46_12750 0.23 -1.2 2,715,005 + IAI46_12750 0.33 +0.3 2,715,197 - IAI46_12750 0.43 -0.4 2,715,197 - IAI46_12750 0.43 +0.3
Or see this region's nucleotide sequence