Strain Fitness in Serratia liquefaciens MT49 around IAI46_12330

Experiment: Cobalt chloride 60 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_12325 and IAI46_12330 are separated by 146 nucleotidesIAI46_12330 and IAI46_12335 are separated by 38 nucleotides IAI46_12325: IAI46_12325 - ABC transporter substrate-binding protein, at 2,615,129 to 2,616,055 _12325 IAI46_12330: IAI46_12330 - GNAT family N-acetyltransferase, at 2,616,202 to 2,616,669 _12330 IAI46_12335: IAI46_12335 - EAL domain-containing protein, at 2,616,708 to 2,618,795 _12335 Position (kb) 2616 2617Strain fitness (log2 ratio) -1 0 1at 2615.236 kb on + strand, within IAI46_12325at 2615.590 kb on + strand, within IAI46_12325at 2615.621 kb on - strand, within IAI46_12325at 2615.632 kb on - strand, within IAI46_12325at 2615.674 kb on + strand, within IAI46_12325at 2615.683 kb on - strand, within IAI46_12325at 2615.698 kb on - strand, within IAI46_12325at 2616.048 kb on + strandat 2616.048 kb on + strandat 2616.048 kb on + strandat 2616.049 kb on - strandat 2616.051 kb on - strandat 2616.051 kb on - strandat 2616.057 kb on - strandat 2616.062 kb on + strandat 2616.071 kb on + strandat 2616.072 kb on - strandat 2616.075 kb on - strandat 2616.319 kb on - strand, within IAI46_12330at 2616.422 kb on - strand, within IAI46_12330at 2616.441 kb on - strand, within IAI46_12330at 2616.697 kb on - strandat 2616.740 kb on + strandat 2617.072 kb on + strand, within IAI46_12335at 2617.174 kb on + strand, within IAI46_12335at 2617.178 kb on + strand, within IAI46_12335at 2617.179 kb on - strand, within IAI46_12335at 2617.335 kb on - strand, within IAI46_12335at 2617.367 kb on - strand, within IAI46_12335at 2617.430 kb on - strand, within IAI46_12335at 2617.475 kb on + strand, within IAI46_12335at 2617.475 kb on + strand, within IAI46_12335at 2617.528 kb on + strand, within IAI46_12335at 2617.529 kb on - strand, within IAI46_12335at 2617.529 kb on - strand, within IAI46_12335at 2617.561 kb on + strand, within IAI46_12335at 2617.618 kb on + strand, within IAI46_12335

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 60 uM, anaerobic
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2,615,236 + IAI46_12325 0.12 -0.8
2,615,590 + IAI46_12325 0.50 -1.3
2,615,621 - IAI46_12325 0.53 -0.5
2,615,632 - IAI46_12325 0.54 +0.3
2,615,674 + IAI46_12325 0.59 -0.4
2,615,683 - IAI46_12325 0.60 +0.6
2,615,698 - IAI46_12325 0.61 +0.4
2,616,048 + -0.6
2,616,048 + -1.3
2,616,048 + -0.7
2,616,049 - -0.5
2,616,051 - -0.7
2,616,051 - -0.5
2,616,057 - -0.0
2,616,062 + -0.3
2,616,071 + -0.0
2,616,072 - +1.2
2,616,075 - -1.5
2,616,319 - IAI46_12330 0.25 +1.2
2,616,422 - IAI46_12330 0.47 -0.4
2,616,441 - IAI46_12330 0.51 +0.7
2,616,697 - -0.0
2,616,740 + +0.9
2,617,072 + IAI46_12335 0.17 -1.7
2,617,174 + IAI46_12335 0.22 +1.1
2,617,178 + IAI46_12335 0.23 +0.9
2,617,179 - IAI46_12335 0.23 +0.5
2,617,335 - IAI46_12335 0.30 -0.6
2,617,367 - IAI46_12335 0.32 +0.3
2,617,430 - IAI46_12335 0.35 +0.6
2,617,475 + IAI46_12335 0.37 -0.3
2,617,475 + IAI46_12335 0.37 +0.7
2,617,528 + IAI46_12335 0.39 +0.4
2,617,529 - IAI46_12335 0.39 -0.3
2,617,529 - IAI46_12335 0.39 +1.2
2,617,561 + IAI46_12335 0.41 +0.8
2,617,618 + IAI46_12335 0.44 -1.1

Or see this region's nucleotide sequence