Strain Fitness in Serratia liquefaciens MT49 around IAI46_12295

Experiment: Cobalt chloride 60 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_12290 and IAI46_12295 are separated by 289 nucleotidesIAI46_12295 and IAI46_12300 are separated by 233 nucleotides IAI46_12290: IAI46_12290 - succinylglutamate desuccinylase/aspartoacylase family protein, at 2,605,670 to 2,606,776 _12290 IAI46_12295: IAI46_12295 - Fic family protein, at 2,607,066 to 2,607,845 _12295 IAI46_12300: IAI46_12300 - ABC transporter ATP-binding protein, at 2,608,079 to 2,609,830 _12300 Position (kb) 2607 2608Strain fitness (log2 ratio) -2 -1 0 1at 2606.188 kb on + strand, within IAI46_12290at 2606.188 kb on + strand, within IAI46_12290at 2606.188 kb on + strand, within IAI46_12290at 2606.193 kb on - strand, within IAI46_12290at 2606.193 kb on - strand, within IAI46_12290at 2606.193 kb on - strand, within IAI46_12290at 2606.193 kb on - strand, within IAI46_12290at 2606.247 kb on + strand, within IAI46_12290at 2606.247 kb on + strand, within IAI46_12290at 2606.247 kb on + strand, within IAI46_12290at 2606.247 kb on + strand, within IAI46_12290at 2606.248 kb on - strand, within IAI46_12290at 2606.344 kb on - strand, within IAI46_12290at 2606.802 kb on + strandat 2607.021 kb on + strandat 2607.072 kb on - strandat 2607.363 kb on - strand, within IAI46_12295at 2607.835 kb on + strandat 2608.735 kb on + strand, within IAI46_12300at 2608.819 kb on + strand, within IAI46_12300

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 60 uM, anaerobic
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2,606,188 + IAI46_12290 0.47 +1.0
2,606,188 + IAI46_12290 0.47 +0.7
2,606,188 + IAI46_12290 0.47 +0.9
2,606,193 - IAI46_12290 0.47 -0.7
2,606,193 - IAI46_12290 0.47 +0.1
2,606,193 - IAI46_12290 0.47 +0.9
2,606,193 - IAI46_12290 0.47 +0.6
2,606,247 + IAI46_12290 0.52 -2.0
2,606,247 + IAI46_12290 0.52 -0.4
2,606,247 + IAI46_12290 0.52 -0.6
2,606,247 + IAI46_12290 0.52 +0.8
2,606,248 - IAI46_12290 0.52 +0.7
2,606,344 - IAI46_12290 0.61 +0.2
2,606,802 + -0.1
2,607,021 + -0.6
2,607,072 - +1.3
2,607,363 - IAI46_12295 0.38 -0.7
2,607,835 + -1.3
2,608,735 + IAI46_12300 0.37 +0.3
2,608,819 + IAI46_12300 0.42 +1.0

Or see this region's nucleotide sequence