Strain Fitness in Serratia liquefaciens MT49 around IAI46_11705

Experiment: Cobalt chloride 60 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_11700 and IAI46_11705 are separated by 33 nucleotidesIAI46_11705 and IAI46_11710 are separated by 88 nucleotidesIAI46_11710 and IAI46_11715 are separated by 148 nucleotidesIAI46_11715 and IAI46_11720 are separated by 35 nucleotides IAI46_11700: IAI46_11700 - MFS transporter, at 2,469,702 to 2,471,189 _11700 IAI46_11705: IAI46_11705 - DUF1161 domain-containing protein, at 2,471,223 to 2,471,522 _11705 IAI46_11710: IAI46_11710 - DUF1283 family protein, at 2,471,611 to 2,471,979 _11710 IAI46_11715: IAI46_11715 - YnfA family protein, at 2,472,128 to 2,472,454 _11715 IAI46_11720: IAI46_11720 - bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG, at 2,472,490 to 2,473,239 _11720 Position (kb) 2471 2472Strain fitness (log2 ratio) -1 0 1 2at 2470.286 kb on - strand, within IAI46_11700at 2470.289 kb on + strand, within IAI46_11700at 2470.290 kb on - strand, within IAI46_11700at 2470.290 kb on - strand, within IAI46_11700at 2470.568 kb on + strand, within IAI46_11700at 2470.683 kb on + strand, within IAI46_11700at 2470.684 kb on - strand, within IAI46_11700at 2470.738 kb on + strand, within IAI46_11700at 2470.738 kb on + strand, within IAI46_11700at 2470.805 kb on + strand, within IAI46_11700at 2470.953 kb on - strand, within IAI46_11700at 2471.301 kb on - strand, within IAI46_11705at 2471.301 kb on - strand, within IAI46_11705at 2471.302 kb on + strand, within IAI46_11705at 2471.302 kb on + strand, within IAI46_11705at 2471.304 kb on + strand, within IAI46_11705at 2471.613 kb on - strandat 2471.672 kb on + strand, within IAI46_11710at 2471.729 kb on - strand, within IAI46_11710at 2471.964 kb on + strandat 2471.991 kb on + strandat 2471.992 kb on - strandat 2471.998 kb on + strandat 2471.999 kb on - strandat 2471.999 kb on - strandat 2472.052 kb on + strandat 2472.053 kb on - strandat 2472.057 kb on - strandat 2472.058 kb on + strandat 2472.108 kb on - strandat 2472.133 kb on - strandat 2472.189 kb on + strand, within IAI46_11715at 2472.190 kb on - strand, within IAI46_11715at 2472.194 kb on + strand, within IAI46_11715at 2472.303 kb on + strand, within IAI46_11715at 2472.303 kb on + strand, within IAI46_11715at 2472.303 kb on + strand, within IAI46_11715at 2472.303 kb on + strand, within IAI46_11715at 2472.303 kb on + strand, within IAI46_11715at 2472.304 kb on - strand, within IAI46_11715at 2472.304 kb on - strand, within IAI46_11715at 2472.306 kb on - strand, within IAI46_11715at 2472.326 kb on + strand, within IAI46_11715at 2472.327 kb on - strand, within IAI46_11715

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 60 uM, anaerobic
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2,470,286 - IAI46_11700 0.39 -0.1
2,470,289 + IAI46_11700 0.39 +0.7
2,470,290 - IAI46_11700 0.40 +0.4
2,470,290 - IAI46_11700 0.40 -0.4
2,470,568 + IAI46_11700 0.58 +0.4
2,470,683 + IAI46_11700 0.66 +0.3
2,470,684 - IAI46_11700 0.66 +0.3
2,470,738 + IAI46_11700 0.70 +0.7
2,470,738 + IAI46_11700 0.70 +1.5
2,470,805 + IAI46_11700 0.74 -0.1
2,470,953 - IAI46_11700 0.84 +0.1
2,471,301 - IAI46_11705 0.26 +0.2
2,471,301 - IAI46_11705 0.26 -0.4
2,471,302 + IAI46_11705 0.26 -1.6
2,471,302 + IAI46_11705 0.26 +0.0
2,471,304 + IAI46_11705 0.27 -1.0
2,471,613 - +0.4
2,471,672 + IAI46_11710 0.17 -0.8
2,471,729 - IAI46_11710 0.32 +0.7
2,471,964 + +0.0
2,471,991 + +0.3
2,471,992 - +0.4
2,471,998 + +1.8
2,471,999 - +0.5
2,471,999 - +0.6
2,472,052 + -0.5
2,472,053 - -0.1
2,472,057 - +0.1
2,472,058 + +0.2
2,472,108 - -0.2
2,472,133 - +1.3
2,472,189 + IAI46_11715 0.19 -0.5
2,472,190 - IAI46_11715 0.19 +0.3
2,472,194 + IAI46_11715 0.20 +0.3
2,472,303 + IAI46_11715 0.54 -0.8
2,472,303 + IAI46_11715 0.54 +0.8
2,472,303 + IAI46_11715 0.54 -0.1
2,472,303 + IAI46_11715 0.54 -0.5
2,472,303 + IAI46_11715 0.54 +0.3
2,472,304 - IAI46_11715 0.54 +0.0
2,472,304 - IAI46_11715 0.54 -1.5
2,472,306 - IAI46_11715 0.54 -0.8
2,472,326 + IAI46_11715 0.61 +0.1
2,472,327 - IAI46_11715 0.61 -0.3

Or see this region's nucleotide sequence