Experiment: Cobalt chloride 60 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_11435 and IAI46_11440 are separated by 112 nucleotides IAI46_11440 and IAI46_11445 are separated by 158 nucleotides
IAI46_11435: IAI46_11435 - benzoate/H(+) symporter BenE family transporter, at 2,411,469 to 2,412,662
_11435
IAI46_11440: IAI46_11440 - helix-turn-helix transcriptional regulator, at 2,412,775 to 2,413,338
_11440
IAI46_11445: IAI46_11445 - S9 family peptidase, at 2,413,497 to 2,415,587
_11445
Position (kb)
2412
2413
2414 Strain fitness (log2 ratio)
-2
-1
0
1 at 2411.787 kb on - strand, within IAI46_11435 at 2411.788 kb on + strand, within IAI46_11435 at 2411.788 kb on + strand, within IAI46_11435 at 2411.788 kb on + strand, within IAI46_11435 at 2411.852 kb on + strand, within IAI46_11435 at 2411.910 kb on - strand, within IAI46_11435 at 2411.910 kb on - strand, within IAI46_11435 at 2412.033 kb on - strand, within IAI46_11435 at 2412.033 kb on - strand, within IAI46_11435 at 2412.172 kb on - strand, within IAI46_11435 at 2412.179 kb on - strand, within IAI46_11435 at 2412.179 kb on - strand, within IAI46_11435 at 2412.219 kb on + strand, within IAI46_11435 at 2412.295 kb on + strand, within IAI46_11435 at 2412.296 kb on - strand, within IAI46_11435 at 2412.567 kb on - strand at 2412.714 kb on + strand at 2412.714 kb on + strand at 2412.727 kb on + strand at 2412.728 kb on - strand at 2413.016 kb on - strand, within IAI46_11440 at 2413.042 kb on + strand, within IAI46_11440 at 2413.276 kb on + strand, within IAI46_11440 at 2413.302 kb on - strand at 2413.409 kb on - strand at 2413.460 kb on + strand at 2413.741 kb on - strand, within IAI46_11445 at 2413.743 kb on + strand, within IAI46_11445 at 2413.746 kb on + strand, within IAI46_11445 at 2413.746 kb on + strand, within IAI46_11445 at 2413.747 kb on - strand, within IAI46_11445 at 2413.847 kb on + strand, within IAI46_11445 at 2413.849 kb on + strand, within IAI46_11445 at 2414.112 kb on + strand, within IAI46_11445 at 2414.173 kb on - strand, within IAI46_11445 at 2414.173 kb on - strand, within IAI46_11445 at 2414.200 kb on + strand, within IAI46_11445 at 2414.200 kb on + strand, within IAI46_11445 at 2414.201 kb on - strand, within IAI46_11445 at 2414.202 kb on + strand, within IAI46_11445 at 2414.202 kb on + strand, within IAI46_11445 at 2414.202 kb on + strand, within IAI46_11445 at 2414.202 kb on + strand, within IAI46_11445 at 2414.202 kb on + strand, within IAI46_11445 at 2414.203 kb on - strand, within IAI46_11445 at 2414.203 kb on - strand, within IAI46_11445 at 2414.203 kb on - strand, within IAI46_11445 at 2414.203 kb on - strand, within IAI46_11445 at 2414.219 kb on + strand, within IAI46_11445 at 2414.241 kb on + strand, within IAI46_11445 at 2414.242 kb on - strand, within IAI46_11445 at 2414.280 kb on + strand, within IAI46_11445
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 60 uM, anaerobic remove 2,411,787 - IAI46_11435 0.27 -0.9 2,411,788 + IAI46_11435 0.27 -1.2 2,411,788 + IAI46_11435 0.27 +0.1 2,411,788 + IAI46_11435 0.27 +0.8 2,411,852 + IAI46_11435 0.32 -0.5 2,411,910 - IAI46_11435 0.37 +1.4 2,411,910 - IAI46_11435 0.37 -1.0 2,412,033 - IAI46_11435 0.47 -0.4 2,412,033 - IAI46_11435 0.47 -2.1 2,412,172 - IAI46_11435 0.59 +0.4 2,412,179 - IAI46_11435 0.59 -0.1 2,412,179 - IAI46_11435 0.59 -1.8 2,412,219 + IAI46_11435 0.63 -0.2 2,412,295 + IAI46_11435 0.69 +0.4 2,412,296 - IAI46_11435 0.69 -1.0 2,412,567 - -0.7 2,412,714 + -1.4 2,412,714 + -0.0 2,412,727 + +1.4 2,412,728 - +0.9 2,413,016 - IAI46_11440 0.43 +0.2 2,413,042 + IAI46_11440 0.47 +0.0 2,413,276 + IAI46_11440 0.89 +1.0 2,413,302 - -0.4 2,413,409 - -0.2 2,413,460 + -0.6 2,413,741 - IAI46_11445 0.12 -2.0 2,413,743 + IAI46_11445 0.12 +0.7 2,413,746 + IAI46_11445 0.12 -0.3 2,413,746 + IAI46_11445 0.12 +0.4 2,413,747 - IAI46_11445 0.12 +0.4 2,413,847 + IAI46_11445 0.17 +0.4 2,413,849 + IAI46_11445 0.17 +0.4 2,414,112 + IAI46_11445 0.29 +0.1 2,414,173 - IAI46_11445 0.32 -0.4 2,414,173 - IAI46_11445 0.32 +1.2 2,414,200 + IAI46_11445 0.34 -0.6 2,414,200 + IAI46_11445 0.34 +0.1 2,414,201 - IAI46_11445 0.34 -0.1 2,414,202 + IAI46_11445 0.34 +0.2 2,414,202 + IAI46_11445 0.34 +0.7 2,414,202 + IAI46_11445 0.34 +1.2 2,414,202 + IAI46_11445 0.34 +0.4 2,414,202 + IAI46_11445 0.34 +0.7 2,414,203 - IAI46_11445 0.34 -0.6 2,414,203 - IAI46_11445 0.34 -0.1 2,414,203 - IAI46_11445 0.34 -0.1 2,414,203 - IAI46_11445 0.34 +0.2 2,414,219 + IAI46_11445 0.35 +0.4 2,414,241 + IAI46_11445 0.36 +0.9 2,414,242 - IAI46_11445 0.36 -0.2 2,414,280 + IAI46_11445 0.37 +0.0
Or see this region's nucleotide sequence