Strain Fitness in Serratia liquefaciens MT49 around IAI46_06410

Experiment: Cobalt chloride 60 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_06405 and IAI46_06410 are separated by 70 nucleotidesIAI46_06410 and IAI46_06415 are separated by 213 nucleotidesIAI46_06415 and IAI46_06420 are separated by 196 nucleotides IAI46_06405: IAI46_06405 - 3-deoxy-7-phosphoheptulonate synthase AroG, at 1,366,499 to 1,367,551 _06405 IAI46_06410: IAI46_06410 - 2,3-diphosphoglycerate-dependent phosphoglycerate mutase, at 1,367,622 to 1,368,374 _06410 IAI46_06415: IAI46_06415 - phosphate-starvation-inducible protein PsiF, at 1,368,588 to 1,368,926 _06415 IAI46_06420: IAI46_06420 - galactose-1-epimerase, at 1,369,123 to 1,370,166 _06420 Position (kb) 1367 1368 1369Strain fitness (log2 ratio) -2 -1 0 1 2at 1366.712 kb on + strand, within IAI46_06405at 1366.840 kb on + strand, within IAI46_06405at 1366.879 kb on + strand, within IAI46_06405at 1366.952 kb on + strand, within IAI46_06405at 1366.993 kb on + strand, within IAI46_06405at 1366.993 kb on + strand, within IAI46_06405at 1367.086 kb on + strand, within IAI46_06405at 1367.086 kb on + strand, within IAI46_06405at 1367.087 kb on - strand, within IAI46_06405at 1367.087 kb on - strand, within IAI46_06405at 1367.192 kb on - strand, within IAI46_06405at 1367.553 kb on - strandat 1368.455 kb on - strandat 1368.467 kb on + strandat 1368.490 kb on - strandat 1368.617 kb on + strandat 1368.618 kb on - strandat 1368.753 kb on - strand, within IAI46_06415at 1368.753 kb on - strand, within IAI46_06415at 1368.797 kb on + strand, within IAI46_06415at 1368.798 kb on - strand, within IAI46_06415at 1368.888 kb on + strand, within IAI46_06415at 1368.888 kb on + strand, within IAI46_06415at 1368.926 kb on + strandat 1368.926 kb on + strandat 1368.926 kb on + strandat 1368.926 kb on + strandat 1368.927 kb on - strandat 1368.927 kb on - strandat 1368.927 kb on - strandat 1368.927 kb on - strandat 1368.927 kb on - strandat 1368.942 kb on + strandat 1368.943 kb on - strandat 1368.995 kb on + strandat 1368.996 kb on - strandat 1369.003 kb on + strandat 1369.014 kb on + strandat 1369.014 kb on + strandat 1369.014 kb on + strandat 1369.031 kb on + strandat 1369.080 kb on + strandat 1369.080 kb on + strandat 1369.080 kb on + strandat 1369.117 kb on - strandat 1369.128 kb on + strandat 1369.128 kb on + strandat 1369.128 kb on + strandat 1369.129 kb on - strandat 1369.161 kb on - strandat 1369.161 kb on - strandat 1369.256 kb on + strand, within IAI46_06420at 1369.256 kb on + strand, within IAI46_06420at 1369.265 kb on + strand, within IAI46_06420at 1369.266 kb on - strand, within IAI46_06420at 1369.301 kb on + strand, within IAI46_06420at 1369.302 kb on - strand, within IAI46_06420at 1369.314 kb on - strand, within IAI46_06420

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 60 uM, anaerobic
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1,366,712 + IAI46_06405 0.20 +0.3
1,366,840 + IAI46_06405 0.32 +0.1
1,366,879 + IAI46_06405 0.36 +0.5
1,366,952 + IAI46_06405 0.43 -0.3
1,366,993 + IAI46_06405 0.47 +0.4
1,366,993 + IAI46_06405 0.47 +0.5
1,367,086 + IAI46_06405 0.56 +0.2
1,367,086 + IAI46_06405 0.56 +0.1
1,367,087 - IAI46_06405 0.56 +0.4
1,367,087 - IAI46_06405 0.56 -0.2
1,367,192 - IAI46_06405 0.66 +0.9
1,367,553 - +0.5
1,368,455 - -0.2
1,368,467 + +0.4
1,368,490 - -1.1
1,368,617 + +0.6
1,368,618 - -0.5
1,368,753 - IAI46_06415 0.49 +0.1
1,368,753 - IAI46_06415 0.49 -0.2
1,368,797 + IAI46_06415 0.62 +0.5
1,368,798 - IAI46_06415 0.62 -0.1
1,368,888 + IAI46_06415 0.88 -0.2
1,368,888 + IAI46_06415 0.88 +1.6
1,368,926 + -0.9
1,368,926 + -0.8
1,368,926 + -1.7
1,368,926 + +0.2
1,368,927 - -0.7
1,368,927 - +0.2
1,368,927 - +0.9
1,368,927 - +0.5
1,368,927 - +2.0
1,368,942 + -1.1
1,368,943 - -0.4
1,368,995 + +0.6
1,368,996 - +0.2
1,369,003 + +0.5
1,369,014 + +0.4
1,369,014 + +1.5
1,369,014 + -1.0
1,369,031 + +0.0
1,369,080 + -0.3
1,369,080 + +0.1
1,369,080 + -0.1
1,369,117 - -1.8
1,369,128 + +1.5
1,369,128 + -0.2
1,369,128 + -0.4
1,369,129 - +0.3
1,369,161 - -0.2
1,369,161 - +0.8
1,369,256 + IAI46_06420 0.13 +0.4
1,369,256 + IAI46_06420 0.13 +1.2
1,369,265 + IAI46_06420 0.14 +1.4
1,369,266 - IAI46_06420 0.14 -0.6
1,369,301 + IAI46_06420 0.17 +0.0
1,369,302 - IAI46_06420 0.17 +0.0
1,369,314 - IAI46_06420 0.18 +0.7

Or see this region's nucleotide sequence