Strain Fitness in Serratia liquefaciens MT49 around IAI46_06120

Experiment: Cobalt chloride 60 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_06115 and IAI46_06120 are separated by 338 nucleotidesIAI46_06120 and IAI46_06125 are separated by 319 nucleotides IAI46_06115: IAI46_06115 - carbohydate-binding domain-containing protein, at 1,307,905 to 1,310,562 _06115 IAI46_06120: IAI46_06120 - ferric iron uptake transcriptional regulator, at 1,310,901 to 1,311,347 _06120 IAI46_06125: IAI46_06125 - flavodoxin FldA, at 1,311,667 to 1,312,206 _06125 Position (kb) 1310 1311 1312Strain fitness (log2 ratio) -1 0 1 2at 1309.909 kb on + strand, within IAI46_06115at 1309.909 kb on + strand, within IAI46_06115at 1309.909 kb on + strand, within IAI46_06115at 1309.910 kb on - strand, within IAI46_06115at 1309.910 kb on - strand, within IAI46_06115at 1309.954 kb on + strand, within IAI46_06115at 1310.093 kb on - strand, within IAI46_06115at 1310.149 kb on + strand, within IAI46_06115at 1310.149 kb on + strand, within IAI46_06115at 1310.150 kb on - strand, within IAI46_06115at 1310.237 kb on - strand, within IAI46_06115at 1310.237 kb on - strand, within IAI46_06115at 1310.238 kb on + strand, within IAI46_06115at 1310.238 kb on + strand, within IAI46_06115at 1310.406 kb on + strandat 1310.407 kb on - strandat 1310.452 kb on - strandat 1310.467 kb on + strandat 1310.468 kb on - strandat 1310.539 kb on + strandat 1310.540 kb on - strandat 1310.560 kb on + strandat 1310.561 kb on - strandat 1310.561 kb on - strandat 1310.603 kb on - strandat 1310.683 kb on + strandat 1310.684 kb on - strandat 1310.745 kb on + strandat 1310.746 kb on - strandat 1310.746 kb on - strandat 1310.746 kb on - strandat 1310.746 kb on - strandat 1310.746 kb on - strandat 1310.746 kb on - strandat 1310.770 kb on + strandat 1310.771 kb on - strandat 1310.771 kb on - strandat 1310.795 kb on + strandat 1310.796 kb on - strandat 1310.800 kb on - strandat 1310.903 kb on - strandat 1311.365 kb on - strandat 1311.368 kb on - strandat 1311.368 kb on - strandat 1311.368 kb on - strandat 1311.373 kb on - strandat 1311.438 kb on - strandat 1311.438 kb on - strandat 1311.453 kb on - strandat 1311.473 kb on + strandat 1311.482 kb on + strandat 1311.483 kb on - strandat 1311.485 kb on - strandat 1311.485 kb on - strandat 1311.505 kb on + strandat 1311.505 kb on + strandat 1311.505 kb on + strandat 1311.505 kb on + strandat 1311.506 kb on - strandat 1311.506 kb on - strandat 1311.506 kb on - strandat 1311.506 kb on - strandat 1311.506 kb on - strandat 1311.549 kb on + strandat 1311.550 kb on - strandat 1311.581 kb on - strandat 1311.587 kb on + strandat 1311.587 kb on + strandat 1311.596 kb on - strandat 1311.632 kb on - strandat 1311.632 kb on - strandat 1311.632 kb on - strandat 1311.632 kb on - strandat 1311.632 kb on - strandat 1311.691 kb on + strandat 1311.691 kb on + strandat 1311.692 kb on - strandat 1311.692 kb on - strandat 1311.713 kb on - strandat 1312.313 kb on - strandat 1312.321 kb on - strandat 1312.346 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 60 uM, anaerobic
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1,309,909 + IAI46_06115 0.75 -1.3
1,309,909 + IAI46_06115 0.75 +1.0
1,309,909 + IAI46_06115 0.75 +0.6
1,309,910 - IAI46_06115 0.75 -1.0
1,309,910 - IAI46_06115 0.75 -1.5
1,309,954 + IAI46_06115 0.77 +0.0
1,310,093 - IAI46_06115 0.82 -0.0
1,310,149 + IAI46_06115 0.84 -0.3
1,310,149 + IAI46_06115 0.84 +0.6
1,310,150 - IAI46_06115 0.84 -0.0
1,310,237 - IAI46_06115 0.88 -1.0
1,310,237 - IAI46_06115 0.88 +0.2
1,310,238 + IAI46_06115 0.88 +0.3
1,310,238 + IAI46_06115 0.88 +0.8
1,310,406 + -1.0
1,310,407 - +0.2
1,310,452 - +0.4
1,310,467 + +0.1
1,310,468 - -1.0
1,310,539 + -0.5
1,310,540 - -0.5
1,310,560 + +0.0
1,310,561 - +0.1
1,310,561 - +0.2
1,310,603 - -0.5
1,310,683 + +0.9
1,310,684 - -1.1
1,310,745 + +0.1
1,310,746 - +0.6
1,310,746 - +0.5
1,310,746 - +0.1
1,310,746 - +0.1
1,310,746 - -0.1
1,310,746 - -0.8
1,310,770 + -0.3
1,310,771 - +0.8
1,310,771 - -0.2
1,310,795 + +0.3
1,310,796 - -0.2
1,310,800 - -0.3
1,310,903 - +0.2
1,311,365 - +1.4
1,311,368 - +1.5
1,311,368 - +1.3
1,311,368 - +1.0
1,311,373 - +2.2
1,311,438 - -0.2
1,311,438 - +2.2
1,311,453 - +1.8
1,311,473 + -0.2
1,311,482 + +1.3
1,311,483 - -0.4
1,311,485 - +1.7
1,311,485 - +1.3
1,311,505 + +0.1
1,311,505 + +0.6
1,311,505 + -0.7
1,311,505 + +0.2
1,311,506 - +1.0
1,311,506 - -0.3
1,311,506 - +1.0
1,311,506 - -0.4
1,311,506 - +0.2
1,311,549 + -0.2
1,311,550 - -0.3
1,311,581 - +1.1
1,311,587 + +0.9
1,311,587 + +2.0
1,311,596 - +0.5
1,311,632 - +1.8
1,311,632 - +0.7
1,311,632 - +0.7
1,311,632 - +1.2
1,311,632 - -0.0
1,311,691 + -0.1
1,311,691 + +0.5
1,311,692 - -0.5
1,311,692 - +0.2
1,311,713 - +0.5
1,312,313 - +0.4
1,312,321 - -0.6
1,312,346 - +0.1

Or see this region's nucleotide sequence